Identifying cooperative transcription factors by combining ChIP-chip data and knockout data

被引:20
|
作者
Yang, Yi [1 ]
Zhang, Zili [2 ]
Li, Yixue [1 ]
Zhu, Xin-Guang [3 ]
Liu, Qi [1 ]
机构
[1] Shanghai Jiao Tong Univ, Sch Life Sci & Biotechnol, Shanghai 200240, Peoples R China
[2] Southwest Univ, Fac Comp & Informat Sci, Chongqing 400715, Peoples R China
[3] Chinese Acad Sci, Shanghai Inst Biol Sci, CAS MPG Partner Inst Computat Biol, Shanghai 200031, Peoples R China
关键词
SACCHAROMYCES-CEREVISIAE; YEAST; COMPLEX; GENOME;
D O I
10.1038/cr.2010.146
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
引用
收藏
页码:1276 / 1278
页数:3
相关论文
共 50 条
  • [31] Genome-Wide Modeling of Transcription Preinitiation Complex Disassembly Mechanisms using ChIP-chip Data
    Samorodnitsky, Eric
    Pugh, B. Franklin
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2010, 6 (04)
  • [32] ChIP-chip versus ChIP-seq: Lessons for experimental design and data analysis
    Joshua WK Ho
    Eric Bishop
    Peter V Karchenko
    Nicolas Nègre
    Kevin P White
    Peter J Park
    [J]. BMC Genomics, 12
  • [33] Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
    Benedikt Zacher
    Pei Fen Kuan
    Achim Tresch
    [J]. BMC Bioinformatics, 11
  • [34] Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
    Zacher, Benedikt
    Kuan, Pei Fen
    Tresch, Achim
    [J]. BMC BIOINFORMATICS, 2010, 11
  • [35] ChIP-chip versus ChIP-seq: Lessons for experimental design and data analysis
    Ho, Joshua W. K.
    Bishop, Eric
    Karchenko, Peter V.
    Negre, Nicolas
    White, Kevin P.
    Park, Peter J.
    [J]. BMC GENOMICS, 2011, 12
  • [36] Inferring transcriptional modules from ChIP-chip, motif and microarray data
    Karen Lemmens
    Thomas Dhollander
    Tijl De Bie
    Pieter Monsieurs
    Kristof Engelen
    Bart Smets
    Joris Winderickx
    Bart De Moor
    Kathleen Marchal
    [J]. Genome Biology, 7
  • [37] ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data
    Buck, MJ
    Nobel, AB
    Lieb, JD
    [J]. GENOME BIOLOGY, 2005, 6 (11)
  • [38] Inferring transcriptional modules from ChIP-chip, motif and microarray data
    Lemmens, Karen
    Dhollander, Thomas
    De Bie, Tijl
    Monsieurs, Pieter
    Engelen, Kristof
    Smets, Bart
    Winderickx, Joris
    De Moor, Bart
    Marchal, Kathleen
    [J]. GENOME BIOLOGY, 2006, 7 (05)
  • [39] ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data
    Michael J Buck
    Andrew B Nobel
    Jason D Lieb
    [J]. Genome Biology, 6
  • [40] Discovering transcriptional modules from motif, chip-chip and microarray data
    De Bie, T
    Monsieurs, P
    Engelen, K
    De Moor, B
    Cristianini, N
    Marchal, K
    [J]. PACIFIC SYMPOSIUM ON BIOCOMPUTING 2005, 2005, : 483 - 494