MRI Brain Tumor Segmentation Using Deep Encoder-Decoder Convolutional Neural Networks

被引:1
|
作者
Yan, Benjamin B. [1 ]
Wei, Yujia [1 ]
Jagtap, Jaidip Manikrao M. [1 ]
Moassefi, Mana [1 ]
Garcia, Diana V. Vera [1 ]
Singh, Yashbir [1 ]
Vahdati, Sanaz [1 ]
Faghani, Shahriar [1 ]
Erickson, Bradley J. [1 ]
Conte, Gian Marco [1 ]
机构
[1] Mayo Clin, Rochester, MN 55901 USA
关键词
MRI; Glioblastoma; Segmentation; NEUROONCOLOGY;
D O I
10.1007/978-3-031-09002-8_7
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
In this study, we focus on Task 1 of the 2021 Multimodal Brain Tumor Segmentation (BraTS) challenge. We present a modified U-net model aimed at improving the segmentation of glioblastomas, reducing the computation timewithout compromising detection sensitivity. Our automated approach takes multimodal MR images as input, generates a bounding box of the brain volume, and combines the model predictions at the 2D slice level into a full 3D segmentation that is written into a NIfTI file. On the official 2021 BraTS test set of 570 cases, the model obtained median Dice scores of 0.80, 0.87, and 0.87, as well as median 95% Hausdorff distances of 2.45, 4.64, and 6.40 for the enhancing tumor, tumor core, and whole tumor regions, respectively.
引用
收藏
页码:80 / 89
页数:10
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