Revisiting Viral RNA-Dependent RNA Polymerases: Insights from Recent Structural Studies

被引:9
|
作者
Ramaswamy, Kavitha [1 ]
Rashid, Mariya [2 ,3 ]
Ramasamy, Selvarajan [4 ]
Jayavelu, Tamilselvan [1 ]
Venkataraman, Sangita [1 ]
机构
[1] Anna Univ, Dept Biotechnol, Sardar Patel Rd, Chennai 600025, Tamil Nadu, India
[2] Natl Def Med Ctr, Taiwan Int Grad Program, Mol Cell Biol, Taipei 115, Taiwan
[3] Acad Sinica, Taipei 115, Taiwan
[4] Natl Res Ctr Banana, Somarasempettai Thogaimalai Rd, Podavur 639103, Tamil Nadu, India
来源
VIRUSES-BASEL | 2022年 / 14卷 / 10期
关键词
replication; polymerase; cofactors; structure; RNA viruses; inhibitors; SARS-COV-2; REPLICATION; INFLUENZA POLYMERASE; COMPLEX REVEALS; L PROTEIN; TRANSCRIPTION; VIRUS; MECHANISM; ACTIVATION; BINDING; SURFACE;
D O I
10.3390/v14102200
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
RNA-dependent RNA polymerases (RdRPs) represent a distinctive yet versatile class of nucleic acid polymerases encoded by RNA viruses for the replication and transcription of their genome. The structure of the RdRP is comparable to that of a cupped right hand consisting of fingers, palm, and thumb subdomains. Despite the presence of a common structural core, the RdRPs differ significantly in the mechanistic details of RNA binding and polymerization. The present review aims at exploring these incongruities in light of recent structural studies of RdRP complexes with diverse cofactors, RNA moieties, analogs, and inhibitors.
引用
收藏
页数:39
相关论文
共 50 条
  • [21] RNA-DEPENDENT RNA-POLYMERASES OF PLANTS
    FRAENKELCONRAT, H
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1983, 80 (02): : 422 - 424
  • [22] RNA-DEPENDENT RNA-POLYMERASES OF PLANTS
    FRAENKELCONRAT, H
    TRENDS IN BIOCHEMICAL SCIENCES, 1979, 4 (08) : 184 - 186
  • [23] Structural Analysis of Monomeric RNA-Dependent Polymerases Revisited
    Jacome, Rodrigo
    Campillo-Balderas, Jose Alberto
    Becerra, Arturo
    Lazcano, Antonio
    JOURNAL OF MOLECULAR EVOLUTION, 2022, 90 (3-4) : 283 - 295
  • [24] TENTATIVE IDENTIFICATION OF RNA-DEPENDENT RNA-POLYMERASES OF DSRNA VIRUSES AND THEIR RELATIONSHIP TO POSITIVE STRAND RNA VIRAL POLYMERASES
    KOONIN, EV
    GORBALENYA, AE
    CHUMAKOV, KM
    FEBS LETTERS, 1989, 252 (1-2) : 42 - 46
  • [25] Structural Insights into the Binding Modes of Viral RNA-Dependent RNA Polymerases Using a Function-Site Interaction Fingerprint Method for RNA Virus Drug Discovery
    Zhao, Zheng
    Bourne, Philip E.
    JOURNAL OF PROTEOME RESEARCH, 2020, 19 (11) : 4698 - 4705
  • [26] Enzymatic and nonenzymatic functions of viral RNA-dependent RNA polymerases within oligomeric arrays
    Spagnolo, Jeannie F.
    Rossignol, Evan
    Bullitt, Esther
    Kirkegaard, Karla
    RNA, 2010, 16 (02) : 382 - 393
  • [27] Triphosphate Reorientation of the Incoming Nucleotide as a Fidelity Checkpoint in Viral RNA-dependent RNA Polymerases
    Yang, Xiaorong
    Liu, Xinran
    Musser, Derek M.
    Moustafa, Ibrahim M.
    Arnold, Jamie J.
    Cameron, Craig E.
    Boehr, David D.
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2017, 292 (09) : 3810 - 3826
  • [28] An efficient colorimetric assay for RNA synthesis by viral RNA-dependent RNA polymerases, using thermostable pyrophosphatase
    Hanh Thi Dieu Nguyen
    Chong, Youhoon
    Oh, Deok-Kun
    Heo, Yong-Seok
    Pham Tan Viet
    Kang, Lin-Woo
    Jeon, Sung-Jong
    Kim, Dong-Eun
    ANALYTICAL BIOCHEMISTRY, 2013, 434 (02) : 284 - 286
  • [29] Functional lability of RNA-dependent RNA polymerases in animals
    Pinzon, Natalia
    Bertrand, Stephanie
    Subirana, Lucie
    Busseau, Isabelle
    Escriva, Hector
    Seitz, Herve
    PLOS GENETICS, 2019, 15 (02):
  • [30] RNA-Dependent RNA Polymerases of Picornaviruses: From the Structure to Regulatory Mechanisms
    Ferrer-Orta, Cristina
    Ferrero, Diego
    Verdaguer, Nuria
    VIRUSES-BASEL, 2015, 7 (08): : 4438 - 4460