A web-based three-dimensional protein retrieval system by matching visual similarity

被引:35
|
作者
Yeh, JS [1 ]
Chen, DY
Chen, BY
Ouhyoung, M
机构
[1] Natl Taiwan Univ, Dept Comp Sci & Informat Engn, Taipei 106, Taiwan
[2] Natl Taiwan Univ, Dept Informat Management, Taipei 106, Taiwan
[3] Natl Taiwan Univ, Grad Inst Network & Multimedia, Taipei 106, Taiwan
关键词
D O I
10.1093/bioinformatics/bti458
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A web-based three-dimensional (M) protein retrieval system is available for protein structure data including all PDB and FSSP dataset. In this system, we use a visual-based matching method to compare the protein structure from multiple viewpoints. It takes less than three seconds for each query with 90% accuracy on an average.
引用
收藏
页码:3056 / 3057
页数:2
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