A web-based three-dimensional protein retrieval system by matching visual similarity

被引:35
|
作者
Yeh, JS [1 ]
Chen, DY
Chen, BY
Ouhyoung, M
机构
[1] Natl Taiwan Univ, Dept Comp Sci & Informat Engn, Taipei 106, Taiwan
[2] Natl Taiwan Univ, Dept Informat Management, Taipei 106, Taiwan
[3] Natl Taiwan Univ, Grad Inst Network & Multimedia, Taipei 106, Taiwan
关键词
D O I
10.1093/bioinformatics/bti458
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A web-based three-dimensional (M) protein retrieval system is available for protein structure data including all PDB and FSSP dataset. In this system, we use a visual-based matching method to compare the protein structure from multiple viewpoints. It takes less than three seconds for each query with 90% accuracy on an average.
引用
收藏
页码:3056 / 3057
页数:2
相关论文
共 50 条
  • [21] NeuRadIR: A Web-Based NeuroRadiological Information Retrieval System
    Dominich, Sandor
    Goth, Julia
    Kiezer, Tamas
    [J]. ERCIM NEWS, 2005, (61): : 52 - 53
  • [22] Three-dimensional protein model similarity analysis based on salient shape index
    Yao, Bo
    Li, Zhong
    Ding, Meng
    Chen, Minhong
    [J]. BMC BIOINFORMATICS, 2016, 17
  • [23] Three-dimensional protein model similarity analysis based on salient shape index
    Bo Yao
    Zhong Li
    Meng Ding
    Minhong Chen
    [J]. BMC Bioinformatics, 17
  • [24] The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome
    Contessoto, Vinicius G.
    Cheng, Ryan R.
    Hajitaheri, Arya
    Dodero-Rojas, Esteban
    Mello, Matheus F.
    Lieberman-Aiden, Erez
    Wolynes, Peter G.
    Di Pierro, Michele
    Onuchic, Jose N.
    [J]. NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) : D172 - D182
  • [25] Design and implement of web-based three-dimensional coalmine safety monitoring visualization control
    Mei, Li
    Shanjun, Mao
    Hongze, Zhao
    Ruidong, Han
    Qunying, Huang
    Yunfeng, Mang
    [J]. Progress in Mining Science and Safety Technology, Pts A and B, 2007, : 2054 - 2060
  • [26] The Application of WEB-based Three-Dimensional Teaching Model in Photoshop Image Processing Course
    Sun, Ping
    Feng, Q-E
    Hu, F-J
    [J]. 2010 INTERNATIONAL CONFERENCE ON EDUCATION AND SPORTS EDUCATION, VOL II, 2010, : 43 - 46
  • [27] Three-Dimensional Web-Based Client Presentation of Integrated BIM and GIS for Smart Cities
    Varlık, Abdullah
    Dursun, İsmail
    [J]. Buildings, 2024, 14 (09)
  • [28] Fragment Finder: a web-based software to identify similar three-dimensional structural motif
    Ananthalakshmi, P
    Kumar, CK
    Jeyasimhan, M
    Sumathi, K
    Sekar, K
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : W85 - W88
  • [29] Visual experiments on the web: Design of a web-based visual experiment management system
    Zuffi, Silvia
    Beltrame, Elisa
    Scala, Paolo
    [J]. IMAGE QUALITY AND SYSTEM PERFORMANCE V, 2008, 6808
  • [30] Three-dimensional pattern matching in protein structure analysis
    Lesk, AM
    [J]. COMBINATORIAL PATTERN MATCHING, 1995, 937 : 248 - 260