The PRIDE server for protein three-dimensional similarity

被引：4
|
作者：
Vlahovicek, K
Carugo, O
Pongor, S
机构：
[1] Int Ctr Genet Engn & Biotechnol, Prot Struct & Funct Grp, I-34012 Trieste, Italy
[2] Univ Pavia, Dept Gen Chem, I-27100 Pavia, Italy
来源：
JOURNAL OF APPLIED CRYSTALLOGRAPHY | 2002年 / 35卷
关键词：
D O I：
10.1107/S002188980201292X
中图分类号：
O6 [化学];
学科分类号：
0703 ;
摘要：
The PRIDE server is an implementation of the PRIDE algorithm that compares protein three-dimensional structures in terms of their C-alpha distance distributions. In response to queries presented as single or concatenated Protein Data Bank (PDB) files, the server can carry out (i) a pairwise comparison of two protein three-dimensional structures, (ii) a structural clustering of protein three-dimensional structures, providing a distance matrix and a dendrogram as an output; and (iii) a similarity search with a protein domain structure query against the CATH database.
引用
收藏
页码：648 / 649
页数：2
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