The Phenomenon of Evolutionary "De Novo Generation" of Genes

被引:2
|
作者
Cherezov, R. O. [1 ]
Vorontsova, Ju E. [1 ]
Simonova, O. B. [1 ]
机构
[1] Russian Acad Sci, Koltzov Inst Dev Biol, Moscow 119334, Russia
基金
俄罗斯基础研究基金会;
关键词
gene; evolution; de novo; DROSOPHILA-MELANOGASTER; RAPID EVOLUTION; GENOME; TRANSCRIPTION; ORIGIN; BIRTH; PROTEINS; TRANSLATION; INTEGRATION; ENHANCERS;
D O I
10.1134/S1062360421060035
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Evolutionary biologists have always been interested in the origin and evolution of new genes. The most obvious mechanisms of their formation are various types of chromosomal and intergenic rearrangements, suggesting the use of existing genes as the source material. The possibility of the origin of a fully functional gene from noncoding DNA, i.e., de novo, was not rejected but it was practically considered as impossible until recently. Nevertheless, in 1996, after analysis of the yeast Saccharomyces cerevisiae genome, the first experimental evidence of the possibility of de novo gene formation was obtained. Ten years later, genes that do not have homologs, presumably having originated de novo, were found in Drosophila. The relatively high probability of the occurrence of genes de novo, estimated in bioinformatics studies, raised the interest in this topic and made the search for genes of this type relevant. Recently, the number of works devoted to the problem of the emergence of de novo genes in different organisms, including humans, is constantly growing, demystifying this phenomenon. Nevertheless, there are still many questions that require theoretical and practical research. This review is devoted to the problem of finding and characterizing genes that have arisen de novo, as well as to the proposed mechanisms of their occurrence.
引用
收藏
页码:390 / 400
页数:11
相关论文
共 50 条
  • [21] Evolution and implications of de novo genes in humans
    Luuk A. Broeils
    Jorge Ruiz-Orera
    Berend Snel
    Norbert Hubner
    Sebastiaan van Heesch
    Nature Ecology & Evolution, 2023, 7 : 804 - 815
  • [22] Evolution and function of de novo originated genes
    Wu, Dong-Dong
    Zhang, Ya-Ping
    MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 67 (02) : 541 - 545
  • [23] Origins of De Novo Genes in Human and Chimpanzee
    Ruiz-Orera, Jorge
    Hernandez-Rodriguez, Jessica
    Chiva, Cristina
    Sabido, Eduard
    Kondova, Ivanela
    Bontrop, Ronald
    Marques-Bonet, Tomas
    Alba, M. Mar
    PLOS GENETICS, 2015, 11 (12):
  • [24] A Molecular Portrait of De Novo Genes in Yeasts
    Vakirlis, Nikolaos
    Hebert, Alex S.
    Opulente, Dana A.
    Achaz, Guillaume
    Hittinger, Chris Todd
    Fischer, Gilles
    Coon, Joshua J.
    Lafontaine, Ingrid
    MOLECULAR BIOLOGY AND EVOLUTION, 2018, 35 (03) : 631 - 645
  • [25] New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation
    McLysaght, Aoife
    Guerzoni, Daniele
    PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2015, 370 (1678)
  • [26] Multiple Pristionchus pacificus genomes reveal distinct evolutionary dynamics between de novo candidates and duplicated genes
    Prabh, Neel
    Roedelsperger, Christian
    GENOME RESEARCH, 2022, 32 (07) : 1315 - 1327
  • [27] De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions
    Li, Ming
    Sun, Congjiao
    Xu, Naiyi
    Bian, Peipei
    Tian, Xiaomeng
    Wang, Xihong
    Wang, Yuzhe
    Jia, Xinzheng
    Heller, Rasmus
    Wang, Mingshan
    Wang, Fei
    Dai, Xuelei
    Luo, Rongsong
    Guo, Yingwei
    Wang, Xiangnan
    Yang, Peng
    Hu, Dexiang
    Liu, Zhenyu
    Fu, Weiwei
    Zhang, Shunjin
    Li, Xiaochang
    Wen, Chaoliang
    Lan, Fangren
    Siddiki, Amam Zonaed
    Suwannapoom, Chatmongkon
    Zhao, Xin
    Nie, Qinghua
    Hu, Xiaoxiang
    Jiang, Yu
    Yang, Ning
    MOLECULAR BIOLOGY AND EVOLUTION, 2022, 39 (04)
  • [28] De novo generation of heterocyclic systems.
    Ding, YB
    Paris, CG
    Kolb, H
    McMartin, C
    Bohacek, R
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1996, 212 : 166 - COMP
  • [29] Revisiting the Evolutionary History of Pigs via De Novo Mutation Rate Estimation in A Three-generation Pedigree
    Zhang, Mingpeng
    Yang, Qiang
    Ai, Huashui
    Huang, Lusheng
    GENOMICS PROTEOMICS & BIOINFORMATICS, 2022, 20 (06) : 1040 - 1052
  • [30] Revisiting the Evolutionary History of Pigs via De Novo Mutation Rate Estimation in A Three-generation Pedigree
    Mingpeng Zhang
    Qiang Yang
    Huashui Ai
    Lusheng Huang
    Genomics,Proteomics & Bioinformatics, 2022, (06) : 1040 - 1052