Experimental evidence of symmetry breaking of transition-path times

被引:36
|
作者
Gladrow, J. [1 ]
Ribezzi-Crivellari, M. [2 ,3 ]
Ritort, F. [3 ,4 ]
Keyser, U. F. [1 ]
机构
[1] Univ Cambridge, Cavevdish Lab, JJ Thomson Ave, Cambridge CB3 0HE, England
[2] PSL Res Univ, ESPCI Paris, CBI, Lab Biochim,UMR 8231, 10 Rue Vauquelin, F-75005 Paris, France
[3] Univ Barcelona, Condensed Matter Phys Dept, C Marti & Franques S-N, E-08028 Barcelona, Spain
[4] Inst Salud Carlos III, CIBER BBN, Madrid 28029, Spain
基金
欧盟地平线“2020”;
关键词
SINGLE-MOLECULE; BROWNIAN-MOTION; DIFFUSION; LANDSCAPE; PROTEINS; FORCE; TRANSPORT; CONSTANT; RATCHETS; TRAP;
D O I
10.1038/s41467-018-07873-9
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
While thermal rates of state transitions in classical systems have been studied for almost a century, associated transition-path times have only recently received attention. Uphill and downhill transition paths between states at different free energies should be statistically indistinguishable. Here, we systematically investigate transition-path-time symmetry and report evidence of its breakdown on the molecular-and meso-scale out of equilibrium. In automated Brownian dynamics experiments, we establish first-passage-time symmetries of colloids driven by femtoNewton forces in holographically-created optical landscapes confined within microchannels. Conversely, we show that transitions which couple in a path-dependent manner to fluctuating forces exhibit asymmetry. We reproduce this asymmetry in folding transitions of DNA-hairpins driven out of equilibrium and suggest a topological mechanism of symmetry breakdown. Our results are relevant to measurements that capture a single coordinate in a multidimensional free energy landscape, as encountered in electrophysiology and single-molecule fluorescence experiments.
引用
收藏
页数:9
相关论文
共 50 条
  • [41] Evidence for a delocalization quantum phase transition without symmetry breaking in CeCoIn5
    Maksimovic, Nikola
    Eilbott, Daniel H.
    Cookmeyer, Tessa
    Wan, Fanghui
    Rusz, Jan
    Nagarajan, Vikram
    Haley, Shannon C.
    Maniv, Eran
    Gong, Amanda
    Faubel, Stefano
    Hayes, Ian M.
    Bangura, Ali
    Singleton, John
    Palmstrom, Johanna C.
    Winter, Laurel
    McDonald, Ross
    Jang, Sooyoung
    Ai, Ping
    Lin, Yi
    Ciocys, Samuel
    Gobbo, Jacob
    Werman, Yochai
    Oppeneer, Peter M.
    Altman, Ehud
    Lanzara, Alessandra
    Analytis, James G.
    SCIENCE, 2022, 375 (6576) : 76 - +
  • [42] Isospin symmetry breaking:: Experimental observation
    Bojowald, J
    Budzanowski, A
    Chatterjee, A
    Ernst, J
    Freindl, L
    Frekers, D
    Hawranek, P
    Ilieva, J
    Jarczyk, L
    Jha, V
    Kilian, K
    Kirillov, D
    Kliczewski, S
    Klimala, W
    Kolev, D
    Kravciková, M
    Kutsarova, T
    Lieb, J
    Machner, H
    Magiera, A
    Martinská, G
    Nann, H
    Pentchev, L
    Piskunov, N
    Protic, D
    von Rossen, P
    Roy, BJ
    Sitnik, I
    Siudak, R
    Strzalkowski, A
    Tsenov, R
    Ulicny, M
    Urbán, J
    Wronska, A
    NUCLEAR DYNAMICS: FROM QUARKS TO NUCLEI, 2003, 15 : 61 - 66
  • [43] Path integrals and symmetry breaking for optimal control theory
    Kappen, HJ
    JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2005, : 205 - 229
  • [44] Hardware Trojan Detection By Symmetry Breaking In Path Delays
    Yoshimizu, Norimasa
    2014 IEEE INTERNATIONAL SYMPOSIUM ON HARDWARE-ORIENTED SECURITY AND TRUST (HOST), 2014, : 107 - 111
  • [45] Phase transition and symmetry breaking in the minority game
    Challet, D
    Marsili, M
    PHYSICAL REVIEW E, 1999, 60 (06): : R6271 - R6274
  • [46] Gravity from Symmetry Breaking Phase Transition
    Volovik, G. E.
    JOURNAL OF LOW TEMPERATURE PHYSICS, 2022, 207 (3-4) : 127 - 137
  • [47] The breaking of duality symmetry, melting, and glass transition
    Kanazawa, Ikuzo
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2008, 64 : C625 - C625
  • [48] Gravity from Symmetry Breaking Phase Transition
    G. E. Volovik
    Journal of Low Temperature Physics, 2022, 207 : 127 - 137
  • [49] Effect of symmetry breaking on transition strength distributions
    Mitchell, GE
    Shriner, JF
    APPLICATION OF ACCELERATORS IN RESEARCH AND INDUSTRY, 2001, 576 : 331 - 334
  • [50] Experimental evidence of tetrahedral symmetry breaking in SiO2 glass under pressure
    Kono, Yoshio
    Ohara, Koji
    Kondo, Nozomi M.
    Yamada, Hiroki
    Hiroi, Satoshi
    Noritake, Fumiya
    Nitta, Kiyofumi
    Sekizawa, Oki
    Higo, Yuji
    Tange, Yoshinori
    Yumoto, Hirokatsu
    Koyama, Takahisa
    Yamazaki, Hiroshi
    Senba, Yasunori
    Ohashi, Haruhiko
    Goto, Shunji
    Inoue, Ichiro
    Hayashi, Yujiro
    Tamasaku, Kenji
    Osaka, Taito
    Yamada, Jumpei
    Yabashi, Makina
    NATURE COMMUNICATIONS, 2022, 13 (01)