Experimental evidence of symmetry breaking of transition-path times

被引:36
|
作者
Gladrow, J. [1 ]
Ribezzi-Crivellari, M. [2 ,3 ]
Ritort, F. [3 ,4 ]
Keyser, U. F. [1 ]
机构
[1] Univ Cambridge, Cavevdish Lab, JJ Thomson Ave, Cambridge CB3 0HE, England
[2] PSL Res Univ, ESPCI Paris, CBI, Lab Biochim,UMR 8231, 10 Rue Vauquelin, F-75005 Paris, France
[3] Univ Barcelona, Condensed Matter Phys Dept, C Marti & Franques S-N, E-08028 Barcelona, Spain
[4] Inst Salud Carlos III, CIBER BBN, Madrid 28029, Spain
基金
欧盟地平线“2020”;
关键词
SINGLE-MOLECULE; BROWNIAN-MOTION; DIFFUSION; LANDSCAPE; PROTEINS; FORCE; TRANSPORT; CONSTANT; RATCHETS; TRAP;
D O I
10.1038/s41467-018-07873-9
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
While thermal rates of state transitions in classical systems have been studied for almost a century, associated transition-path times have only recently received attention. Uphill and downhill transition paths between states at different free energies should be statistically indistinguishable. Here, we systematically investigate transition-path-time symmetry and report evidence of its breakdown on the molecular-and meso-scale out of equilibrium. In automated Brownian dynamics experiments, we establish first-passage-time symmetries of colloids driven by femtoNewton forces in holographically-created optical landscapes confined within microchannels. Conversely, we show that transitions which couple in a path-dependent manner to fluctuating forces exhibit asymmetry. We reproduce this asymmetry in folding transitions of DNA-hairpins driven out of equilibrium and suggest a topological mechanism of symmetry breakdown. Our results are relevant to measurements that capture a single coordinate in a multidimensional free energy landscape, as encountered in electrophysiology and single-molecule fluorescence experiments.
引用
收藏
页数:9
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