A Multi-Laboratory Comparison of Methods for Detection and Quantification of African Swine Fever Virus

被引:4
|
作者
Olesen, Ann Sofie [1 ,2 ,3 ]
Rasmussen, Thomas Bruun [1 ,3 ]
Nielsen, Soren Saxmose [4 ]
Belsham, Graham J. [1 ,2 ]
Boklund, Anette [4 ]
Ploegaert, Tosca [5 ]
Moonen-Leusen, Bernie [5 ]
Blome, Sandra [6 ]
Botner, Anette [1 ,2 ]
机构
[1] Tech Univ Denmark, DTU Natl Vet Inst, DK-4771 Lindholm, Kalvehave, Denmark
[2] Univ Copenhagen, Sect Vet Clin Microbiol, Dept Vet & Anim Sci, DK-1870 Frederiksberg C, Denmark
[3] Statens Serum Inst, Dept Virus & Microbiol Special Diagnost, DK-2300 Copenhagen S, Denmark
[4] Univ Copenhagen, Dept Vet & Anim Sci, Sect Anim Welf & Dis Control, DK-1870 Frederiksberg C, Denmark
[5] Wageningen Univ & Res, Dept Virol Wageningen Biovet Res, NL-8221 RA Lelystad, Netherlands
[6] Friedrich Loeffler Inst, Inst Diagnost Virol, D-17493 Greifswald, Germany
来源
PATHOGENS | 2022年 / 11卷 / 03期
关键词
African swine fever; qPCR; quantification; ring trial; virus infectivity; virus titration; WILD BOAR; CELL-LINE; PCR ASSAY; INFECTION; EXPRESSION; GENERATION; DIAGNOSIS; SURVIVAL; ISOLATE; FIELD;
D O I
10.3390/pathogens11030325
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
African swine fever is a viral disease of the family Suidae. Methods to detect and quantify African swine fever virus (ASFV) include qPCR and virus infectivity assays. Individual laboratories often use in-house procedures for these assays, which can hamper the comparison of results. The objective of this study was to estimate the probability of ASFV detection using these assays, and to determine the inter-test correlations between results. This was achieved by testing a panel of 80 samples at three reference laboratories. Samples were analysed using nucleic acid extraction and qPCR, as well as virus infectivity assays. For qPCR, a very high probability (ranging from 0.96 to 1.0) of detecting ASFV DNA was observed for all tested systems. For virus infectivity assays in cells, the probability of detecting infectious ASFV varied from 0.68 to 0.90 and was highest using pulmonary alveolar macrophages, followed by MARC145 cells, peripheral blood monocytes, and finally wild boar lung cells. Intraclass correlation coefficient estimates of 0.97 (0.96-0.98) between qPCR methods, 0.80 (0.74-0.85) to 0.94 (0.92-0.96) between virus infectivity assays, and 0.77 (0.68-0.83) to 0.95 (0.93-0.96) between qPCR methods and virus infectivity assays were obtained. These findings show that qPCR gives the highest probability for the detection of ASFV.
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页数:14
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