Complete genome sequence of Veillonella parvula type strain (Te3T)

被引:27
|
作者
Gronow, Sabine [2 ]
Welnitz, Sabine [2 ]
Lapidus, Alla [1 ]
Nolan, Matt [1 ]
Ivanova, Natalia [1 ]
Del Rio, Tijana Glavina [1 ]
Copeland, Alex [1 ]
Chen, Feng [1 ]
Tice, Hope [1 ]
Pitluck, Sam [1 ]
Cheng, Jan-Fang [1 ]
Saunders, Elizabeth [1 ,3 ]
Brettin, Thomas [1 ,3 ]
Han, Cliff [1 ,3 ]
Detter, John C. [1 ,3 ]
Bruce, David [1 ,3 ]
Goodwin, Lynne [1 ,3 ]
Land, Miriam [1 ,4 ]
Hauser, Loren [1 ,4 ]
Chang, Yun-Juan [1 ,4 ]
Jeffries, Cynthia D. [1 ,4 ]
Pati, Amrita [1 ]
Mavromatis, Konstantinos [1 ]
Mikhailova, Natalia [1 ]
Chen, Amy [5 ]
Palaniappan, Krishna [5 ]
Chain, Patrick [1 ,3 ]
Rohde, Manfred [6 ]
Goeker, Markus [2 ]
Bristow, Jim [1 ]
Eisen, Jonathan A. [1 ,7 ]
Markowitz, Victor
Hugenholtz, Philip [1 ]
Kyrpides, Nikos C. [1 ]
Klenk, Hans-Peter [2 ]
Lucas, Susan [1 ]
机构
[1] DOE Joint Genome Inst, Walnut Creek, CA USA
[2] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany
[3] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA
[4] Oak Ridge Natl Lab, Oak Ridge, TN USA
[5] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA
[6] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany
[7] Univ Calif Davis Genome Ctr, Davis, CA USA
来源
STANDARDS IN GENOMIC SCIENCES | 2010年 / 2卷 / 01期
关键词
opportunistic infections; human oral microflora; dental plaque; intergeneric coaggregation; methylmalonyl-CoA decarboxylase; Veillonellaceae; BACTERIA; SYSTEM; SELENOMONAS; DIVERSITY; ARCHAEA; NOV;
D O I
10.4056/sigs.521107
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Veillonella parvula (Veillon and Zuber 1898) Prevot 1933 is the type species of the genus Veillonella in the family Veillonellaceae within the order Clostridiales. The species V. parvula is of interest because it is frequently isolated from dental plaque in the human oral cavity and can cause opportunistic infections. The species is strictly anaerobic and grows as small cocci which usually occur in pairs. Veillonellae are characterized by their unusual metabolism which is centered on the activity of the enzyme methylmalonyl-CoA decarboxylase. Strain Te3(T), the type strain of the species, was isolated from the human intestinal tract. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the large clostridial family Veillonellaceae, and the 2,132,142 bp long single replicon genome with its 1,859 protein-coding and 61 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
引用
收藏
页码:57 / 65
页数:9
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