Biophysical Implications of the Peyrard-Bishop-Dauxois Model of DNA Dynamics

被引:17
|
作者
Zdravkovic, S. [2 ]
Sataric, M. [3 ]
Tuszynski, J. [1 ]
机构
[1] Univ Alberta, Dept Phys, Edmonton, AB T6G 2J1, Canada
[2] Univ Pristina, Fac Elect Engn, Kosovska Mitrovica, Serbia
[3] Univ Novi Sad, Fac Tech Sci, Novi Sad, Serbia
基金
加拿大自然科学与工程研究理事会;
关键词
DNA; PBD model; breather modes; regulatory proteins;
D O I
10.1166/jctn.2004.013
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
In this paper, we expand and elaborate on one of the most widely used nonlinear models of DNA dynamics. A part of this work is dedicated to the parameter of helical interaction within this simple, but not trivial model of a DNA molecule. We also propose an interesting role for the so-called breather solitons emerging from the model and being involved in protein regulation of nonlinear dynamics of DNA. Finally, we examine the possible role of harmonic electric fields in the unzipping of complementary strands of DNA.
引用
收藏
页码:169 / 179
页数:11
相关论文
共 50 条
  • [31] The thermal denaturation of DNA in the Peyrard-Bishop model
    Nyeo, SL
    Yang, IC
    MODERN PHYSICS LETTERS B, 2000, 14 (09): : 313 - 317
  • [32] Energy localization in the Peyrard-Bishop DNA model
    De Luca, J
    Drigo, E
    Ponno, A
    Ruggiero, JR
    PHYSICAL REVIEW E, 2004, 70 (02): : 9
  • [33] Discrete breathers in the Peyrard-Bishop model of DNA
    Fakhretdinov, M. I.
    Zakir'yanov, F. K.
    TECHNICAL PHYSICS, 2013, 58 (07) : 931 - 935
  • [34] Existence and dynamics of modulated solitary waves in the modified Peyrard-Bishop model of DNA
    Djine, Arnaud
    Deffo, Guy Roger
    Yamgoue, Serge Bruno
    CHAOS SOLITONS & FRACTALS, 2025, 194
  • [35] Theory of DNA melting based on the Peyrard-Bishop model
    Zhang, YL
    Zheng, WM
    Liu, JX
    Chen, YZ
    PHYSICAL REVIEW E, 1997, 56 (06) : 7100 - 7115
  • [36] Solitary wave solutions of the fractional Peyrard Bishop DNA model
    Shafique, Tooba
    Abbas, Muhammad
    Mahmood, Ayesha
    Abdullah, Farah Aini
    Alzaidi, Ahmed SM.
    Nazir, Tahir
    OPTICAL AND QUANTUM ELECTRONICS, 2024, 56 (05)
  • [37] Modulational instability in the anharmonic Peyrard-Bishop model of DNA
    Tabi, C. B.
    Mohamadou, A.
    Kofane, T. C.
    EUROPEAN PHYSICAL JOURNAL B, 2010, 74 (02): : 151 - 158
  • [38] Modulational instability in the anharmonic Peyrard-Bishop model of DNA
    C. B. Tabi
    A. Mohamadou
    T. C. Kofane
    The European Physical Journal B, 2010, 74 : 151 - 158
  • [39] Dynamics and stability analysis of nonlinear DNA molecules: Insights from the Peyrard-Bishop model
    Khater, Mostafa M. A.
    Zakarya, Mohammed
    Nisar, Kottakkaran Sooppy
    Abdel-Aty, Abdel-Haleem
    AIMS MATHEMATICS, 2024, 9 (09): : 23449 - 23467
  • [40] Analytical study of fractional DNA dynamics in the Peyrard-Bishop oscillator-chain model
    Riaz, Muhammad Bilal
    Fayyaz, Marriam
    Rahman, Riaz Ur
    Martinovic, Jan
    Tunc, Osman
    AIN SHAMS ENGINEERING JOURNAL, 2024, 15 (08)