Biophysical Implications of the Peyrard-Bishop-Dauxois Model of DNA Dynamics

被引：17
|
作者：
Zdravkovic, S. [2 ]
Sataric, M. [3 ]
Tuszynski, J. [1 ]
机构：
[1] Univ Alberta, Dept Phys, Edmonton, AB T6G 2J1, Canada
[2] Univ Pristina, Fac Elect Engn, Kosovska Mitrovica, Serbia
[3] Univ Novi Sad, Fac Tech Sci, Novi Sad, Serbia
来源：
JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE | 2004年 / 1卷 / 02期
基金：
加拿大自然科学与工程研究理事会;
关键词：
DNA; PBD model; breather modes; regulatory proteins;
D O I：
10.1166/jctn.2004.013
中图分类号：
O6 [化学];
学科分类号：
0703 ;
摘要：
In this paper, we expand and elaborate on one of the most widely used nonlinear models of DNA dynamics. A part of this work is dedicated to the parameter of helical interaction within this simple, but not trivial model of a DNA molecule. We also propose an interesting role for the so-called breather solitons emerging from the model and being involved in protein regulation of nonlinear dynamics of DNA. Finally, we examine the possible role of harmonic electric fields in the unzipping of complementary strands of DNA.
引用
收藏
页码：169 / 179
页数：11
相关论文
共 50 条
  • [21] Breather dynamics in the Peyrard–Bishop DNA model
    M. I. Fakhretdinov
    F. K. Zakir’yanov
    Russian Physics Journal, 2012, 54 : 1304 - 1310
  • [22] Helicoidal Peyrard—Bishop Model of Dna Dynamics
    Slobodan Zdravković
    Journal of Nonlinear Mathematical Physics, 2011, 18 : 463 - 484
  • [23] HELICOIDAL PEYRARD-BISHOP MODEL OF DNA DYNAMICS
    Zdravkovic, Slobodan
    JOURNAL OF NONLINEAR MATHEMATICAL PHYSICS, 2011, 18 : 463 - 484
  • [24] Breather dynamics in the Peyrard-Bishop DNA model
    Fakhretdinov, M. I.
    Zakir'yanov, F. K.
    RUSSIAN PHYSICS JOURNAL, 2012, 54 (12) : 1304 - 1310
  • [25] Complex Ginzburg–Landau equation in the modified Peyrard–Bishop–Dauxois model
    Henock Ngoubi
    Raoul yonkeu Mbakob
    Issa Sali
    Germain Hubert Ben-Bolie
    Timoleon Crepin Kofané
    The European Physical Journal Plus, 138
  • [26] Detection of parametric changes in the Peyrard-Bishop- Dauxois model of DNA using nonlinear Kalman filtering
    G. Rigatos
    E. Rigatou
    J. D. Djida
    Journal of Biological Physics, 2015, 41 : 59 - 83
  • [27] Detection of parametric changes in the Peyrard-Bishop- Dauxois model of DNA using nonlinear Kalman filtering
    Rigatos, G.
    Rigatou, E.
    Djida, J. D.
    JOURNAL OF BIOLOGICAL PHYSICS, 2015, 41 (01) : 59 - 83
  • [28] Dynamics of Peyrard Bishop model of DNA under the influence of solvent interaction
    Joy, Christy Maria
    Ayyappam, N.
    Kavitha, L.
    MATERIALS TODAY-PROCEEDINGS, 2022, 51 : 1777 - 1781
  • [29] Dynamics of DNA breathing in the Peyrard-Bishop model with damping and external force
    Sulaiman, A.
    Zen, F. P.
    Alatas, H.
    Handoko, L. T.
    PHYSICA D-NONLINEAR PHENOMENA, 2012, 241 (19) : 1640 - 1647
  • [30] Discrete breathers in the Peyrard-Bishop model of DNA
    M. I. Fakhretdinov
    F. K. Zakir’yanov
    Technical Physics, 2013, 58 : 931 - 935
12345