Multi-scale learning based segmentation of glands in digital colonrectal pathology images

被引:7
|
作者
Gao, Yi [1 ,2 ,3 ]
Liu, William [4 ]
Arjun, Shipra [5 ]
Zhu, Liangjia
Ratner, Vadim
Kurc, Tahsin [1 ,3 ]
Saltz, Joel [1 ,3 ]
Tannenbaum, Allen [1 ,2 ,3 ]
机构
[1] SUNY Stony Brook, Dept Biomed Informat, Stony Brook, NY 11794 USA
[2] SUNY Stony Brook, Dept Appl Math & Stat, Stony Brook, NY 11794 USA
[3] SUNY Stony Brook, Dept Comp Sci, Stony Brook, NY 11794 USA
[4] Upper Sch Buckingham Browne & Nichols, Cambridge, MA USA
[5] SUNY Stony Brook, Dept Biomed Engn, Stony Brook, NY 11794 USA
来源
关键词
digital pathology; gland segmentation; texture; dictionary learning;
D O I
10.1117/12.2216790
中图分类号
O43 [光学];
学科分类号
070207 ; 0803 ;
摘要
Digital histopathological images provide detailed spatial information of the tissue at micrometer resolution. Among the available contents in the pathology images, meso-scale information, such as the gland morphology, texture, and distribution, are useful diagnostic features. In this work, focusing on the colon-rectal cancer tissue samples, we propose a multi-scale learning based segmentation scheme for the glands in the colon-rectal digital pathology slides. The algorithm learns the gland and non-gland textures from a set of training images in various scales through a sparse dictionary representation. After the learning step, the dictionaries are used collectively to perform the classification and segmentation for the new image.
引用
收藏
页数:6
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