Genetic diversity and population structure of the Korean field mouse(Apodumus peninsulae) in South Korea: from 17 previously and newly developed microsatellite markers

被引:1
|
作者
Eo, Soo Hyung [2 ,3 ]
Rhim, Shin-Jae [1 ]
Lee, Woo-Shin [4 ]
Carroll, John P. [2 ]
机构
[1] Chung Ang Univ, Sch Bioresource & Biosci, Ansung 456756, South Korea
[2] Univ Georgia, Warnell Sch Forestry & Nat Resources, Athens, GA 30602 USA
[3] Purdue Univ, Dept Forestry & Nat Resources, W Lafayette, IN 47907 USA
[4] Seoul Natl Univ, Dept Forest Sci, Seoul 151921, South Korea
关键词
Apodemus peninsulae; Gene flow; Genetic structure; Marker development; Taebaek mountain ranges; APODEMUS-PENINSULAE; AMPLIFICATION; HANTAVIRUS; EVOLUTION; VIRUS;
D O I
10.1007/s13258-010-0123-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
To provide more reliable genetic information on species and minimize experimental errors, biologists increase the number of genetic markers available and then carefully select optimal markers from a large candidate pool. We developed nine novel microsatellite markers from the Korean field mouse (Apodemus peninsulae), which is one of the most dominant forest animals in South Korea. The mean observed and expected heterozygosities across nine markers were 0.65 and 0.73, respectively, with an average polymorphic information content of 0.70. Using 17 microsatellite markers (nine polymorphic markers in this study, in combination with eight previously reported for the species), we conducted genetic analysis on the animals from six sampling locations. These locations are divided into the eastern (EAST) and the western (WEST) sides of the Taebaek mountain ranges in South Korea. Genetic diversity was high at both groups, with the mean expected heterozygosity of 0.77 in EAST and 0.78 in WEST. However, we did not observe strong evidence of genetic divergence between two groups. Future genetic research with more samples incorporating ecological study may clarify population structure in the species and the hypothesis of the mountains discontinuity of gene flow.
引用
下载
收藏
页码:445 / 449
页数:5
相关论文
共 50 条
  • [21] Analysis of Genetic Diversity and Population Structure in Sophora japonica Linn. in China With Newly Developed SSR Markers
    Wen-Jiang Shu
    Jian-min Tang
    Zong-You Chen
    Yun-Sheng Jiang
    Zheng-Feng Wang
    Xiao Wei
    Plant Molecular Biology Reporter, 2019, 37 : 87 - 97
  • [22] Genetic diversity and population structure of Korean wild soybean (Glycine soja Sieb. and Zucc.) inferred from microsatellite markers
    Nawaz, Muhammad Amjad
    Yang, Seung Hwan
    Rehman, Hafiz Mamoon
    Baloch, Faheem Shehzad
    Lee, Jeong Dong
    Park, Jong Hyun
    Chung, Gyuhwa
    BIOCHEMICAL SYSTEMATICS AND ECOLOGY, 2017, 71 : 87 - 96
  • [23] Genetic diversity and population genetic structure of pacific oyster (Crassostrea gigas) from Korea using microsatellite marker
    Kim, Woo-Jin
    Park, Ki-Yeol
    Nam, Bo-The
    Kong, Hee Jeong
    Kim, Young-Ok
    Park, Eun-Mi
    Kim, Tae-Ik
    JOURNAL OF SHELLFISH RESEARCH, 2008, 27 (04): : 1021 - 1022
  • [24] Population genetic study of the raccoon dog (Nyctereutes procyonoides) in South Korea using newly developed 12 micro satellite markers
    Hong, YoonJee
    Kim, Kyung-Seok
    Lee, Hang
    Min, Mi-Sook
    GENES & GENETIC SYSTEMS, 2013, 88 (01) : 69 - 76
  • [25] Development of Microsatellite Markers and Analysis of Genetic Diversity and Population Structure of Colletotrichum gloeosporioides from Ethiopia
    Moges, Asmare D.
    Admassu, Belayneh
    Belew, Derbew
    Yesuf, Mohammed
    Njuguna, Joyce
    Kyalo, Martina
    Ghimire, Sita R.
    PLOS ONE, 2016, 11 (03):
  • [26] Genetic diversity and population structure of the endangered fish Pseudobagrus brevicorpus (Bagridae) using a newly developed 12-microsatellite marker
    Yeong Ho Kwak
    Kang Rae Kim
    Moo Sang Kim
    In Chul Bang
    Genes & Genomics, 2020, 42 : 1291 - 1298
  • [27] Population genetic structure and genetic diversity of soybean aphid collections from the USA, South Korea, and Japan
    Jun, Tae-Hwan
    Michel, Andrew P.
    Wenger, Jacob A.
    Kang, Sung-Taeg
    Mian, M. A. Rouf
    GENOME, 2013, 56 (06) : 345 - 350
  • [28] Population genetic structure of Korean pen shell (Atrina pectinata) in Korea inferred from microsatellite marker analysis
    Hye Suck An
    Jang Wook Lee
    Chun Mae Dong
    Genes & Genomics, 2012, 34 : 681 - 688
  • [29] Population genetic structure of Korean pen shell (Atrina pectinata) in Korea inferred from microsatellite marker analysis
    An, Hye Suck
    Lee, Jang Wook
    Dong, Chun Mae
    GENES & GENOMICS, 2012, 34 (06) : 681 - 688
  • [30] Genetic diversity and population structure of the Asian green mussel Perna viridis in South China Sea based on microsatellite markers
    Ye, Ying Ying
    Senanan, Wansuk
    Li, Ji Ji
    Cai, Hui Wen
    Wu, Chang Wen
    BIOCHEMICAL SYSTEMATICS AND ECOLOGY, 2016, 68 : 135 - 141