H-NS forms a superhelical protein scaffold for DNA condensation

被引:150
|
作者
Arold, Stefan T. [1 ]
Leonard, Paul G. [2 ]
Parkinson, Gary N. [3 ]
Ladbury, John E. [1 ,2 ]
机构
[1] Univ Texas MD Anderson Canc Ctr, Dept Biochem & Mol Biol, Unit 1000, Houston, TX 77030 USA
[2] UCL, Dept Struct & Mol Biol, London WC1E 6BT, England
[3] Univ London, Sch Pharm, Dept Pharmaceut & Biol Chem, London WC1N 1AX, England
关键词
chromatin; DNA binding; nucleoid; supercoil; transcriptional regulation; CHROMATIN-STRUCTURING PROTEIN; NUCLEOID-ASSOCIATED PROTEIN; ESCHERICHIA-COLI; OLIGOMERIZATION DOMAIN; DIMERIZATION DOMAIN; SELF-ASSOCIATION; GENE-EXPRESSION; BINDING; MECHANISM; TRANSCRIPTION;
D O I
10.1073/pnas.1006966107
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The histone-like nucleoid structuring (H-NS) protein plays a fundamental role in DNA condensation and is a key regulator of enterobacterial gene expression in response to changes in osmolarity, pH, and temperature. The protein is capable of high-order self-association via interactions of its oligomerization domain. Using crystallography, we have solved the structure of this complete domain in an oligomerized state. The observed superhelical structure establishes a mechanism for the self-association of H-NS via both an N-terminal antiparallel coiled-coil and a second, hitherto unidentified, helix-turn-helix dimerization interface at the C-terminal end of the oligomerization domain. The helical scaffold suggests the formation of a H-NS: plectonemic DNA nucleoprotein complex that is capable of explaining published biophysical and functional data, and establishes a unifying structural basis for coordinating the DNA packaging and transcription repression functions of H-NS.
引用
收藏
页码:15728 / 15732
页数:5
相关论文
共 50 条
  • [41] H-NS, the genome sentinel
    Charles J. Dorman
    Nature Reviews Microbiology, 2007, 5 : 157 - 161
  • [42] The Role of Escherichia coli Protein H-NS in Chromosome Integrity
    Pina, Cara
    Lovett, Susan
    FASEB JOURNAL, 2015, 29
  • [44] Effect of H-NS on the elongation and compaction of single DNA molecules in a nanospace
    Zhang, Ce
    Guttula, Durgarao
    Liu, Fan
    Malar, Piravi P.
    Ng, Siow Yee
    Dai, Liang
    Doyle, Patrick S.
    van Kan, Jeroen A.
    van der Maarel, Johan R. C.
    SOFT MATTER, 2013, 9 (40) : 9593 - 9601
  • [45] Indirect DNA Readout by an H-NS Related Protein: Structure of the DNA Complex of the C-Terminal Domain of Ler
    Cordeiro, Tiago N.
    Schmidt, Holger
    Madrid, Cristina
    Juarez, Antonio
    Bernado, Pau
    Griesinger, Christian
    Garcia, Jesus
    Pons, Miquel
    PLOS PATHOGENS, 2011, 7 (11)
  • [46] THE CHROMATIN-ASSOCIATED PROTEIN H-NS INTERACTS WITH CURVED DNA TO INFLUENCE DNA TOPOLOGY AND GENE-EXPRESSION
    OWENHUGHES, TA
    PAVITT, GD
    SANTOS, DS
    SIDEBOTHAM, JM
    HULTON, CSJ
    HINTON, JCD
    HIGGINS, CF
    CELL, 1992, 71 (02) : 255 - 265
  • [47] Identification of the DNA binding surface of H-NS protein from Escherichia coli by heteronuclear NMR spectroscopy
    Shindo, H
    Ohnuki, A
    Ginba, H
    Katoh, E
    Ueguchi, C
    Mizuno, T
    Yamazaki, T
    FEBS LETTERS, 1999, 455 (1-2) : 63 - 69
  • [48] Silver Ions Caused Faster Diffusion of H-NS Proteins in Live E. coli by Weakening the Binding Between H-NS Proteins and DNA
    Sadoon, Asmaa A.
    Khadka, Prabhat
    Freeland, Jack
    Gundampati, Ravi
    Mason, Rayan
    Ruiz, Mazon
    Thallapuranam, Suresh K.
    Chen, Jing
    Wang, Yong
    BIOPHYSICAL JOURNAL, 2020, 118 (03) : 520A - 520A
  • [49] H-NS mediated compaction of DNA visualised by atomic force microscopy
    Dame, RT
    Wyman, C
    Goosen, N
    NUCLEIC ACIDS RESEARCH, 2000, 28 (18) : 3504 - 3510
  • [50] Predicting the mechanism and rate of H-NS binding to AT-rich DNA
    Riccardi, Enrico
    van Mastbergen, Eva C.
    Navarre, William Wiley
    Vreede, Jocelyne
    PLOS COMPUTATIONAL BIOLOGY, 2019, 15 (03)