Retrieval and Investigation of Data on SARS-CoV-2 and COVID-19 Using Bioinformatics Approach

被引:22
|
作者
Fahmi, Muhamad [1 ,2 ]
Kharisma, Viol Dhea [3 ,4 ,5 ]
Ansori, Arif Nur Muhammad [6 ,7 ]
Ito, Masahiro [1 ,2 ]
机构
[1] Ritsumeikan Univ, Grad Sch Life Sci, Adv Life Sci Program, Shiga, Japan
[2] Universal Sci Educ & Res Network USERN, Systemat Review & Metaanal Expert Grp SRMEG, Kusatsu, Japan
[3] Brawijaya Univ, Fac Mathemat & Nat Sci, Dept Biol, Master Program Biol, Malang, Indonesia
[4] Generasi Biol Indonesia GENBINESIA Fdn, Div Mol Biol & Genet, Computat Virol & Complex Sci Res Unit, Gresik, Indonesia
[5] Universal Sci Educ & Res Network USERN, Systemat Review & Metaanal Expert Grp SRMEG, Malang, Indonesia
[6] Airlangga Univ, Fac Vet Med, Doctoral Program Vet Sci, Kampus C Univ Airlangga, Surabaya, Indonesia
[7] Universal Sci Educ & Res Network USERN, Systemat Review & Metaanal Expert Grp SRMEG, Surabaya, Indonesia
来源
关键词
COVID-19; Databases; Information hubs; Molecular evolution; Phylogenetic inference; SARS-CoV-2; Vaccine design; MULTIPLE SEQUENCE ALIGNMENT; HEPATITIS-C VIRUS; B-CELL EPITOPES; DATA-BANK PDB; HLA-DR; CORONAVIRUS; PREDICTION; PROTEIN; RECOMBINATION; MECHANISMS;
D O I
10.1007/978-3-030-63761-3_47
中图分类号
R1 [预防医学、卫生学];
学科分类号
1004 ; 120402 ;
摘要
Sudden emergence and a rapid outbreak of SARS-CoV-2 accompanied by a devastating impact on the economy and public health has driven extensive scientific mobilization to study and elucidate the various associated concerns about SARS-CoV-2. Bioinformatics plays a crucial role in addressing and providing solutions to questions about SARS-CoV-2. It helps shorten the duration for the vaccine development process and the discovery of potential clinical interventions through the simulation and information retrieval, and the development of well-ordered information hubs and resources, which are essential to derive data and meaningful findings from the current massive information about SARS-CoV-2. Advanced algorithms in this field also provide approaches that are essential to elucidate the relationship, origin, and evolutionary process of SARS-CoV-2. Here, we report essential bioinformatics entities, such as database and platform development, molecular evolution and phylogenetic analyses, and vaccine designs, that are useful to solve the SARS-CoV-2 conundrum.
引用
收藏
页码:839 / 857
页数:19
相关论文
共 50 条
  • [41] Adaptive immunity to SARS-CoV-2 and COVID-19
    Sette, Alessandro
    Crotty, Shane
    CELL, 2021, 184 (04) : 861 - 880
  • [42] SARS-CoV-2: Remarks on the COVID-19 Pandemic
    Egbert Piasecki
    Archivum Immunologiae et Therapiae Experimentalis, 2020, 68
  • [43] Decoding Covid-19 with the SARS-CoV-2 Genome
    Ellis, Phoebe
    Somogyvari, Ferenc
    Virok, Dezso P.
    Noseda, Michela
    McLean, Gary R.
    CURRENT GENETIC MEDICINE REPORTS, 2021, 9 (01) : 1 - 12
  • [44] Infection with SARS-CoV-2 is not the same as covid-19
    Bamji, Andrew
    BMJ-BRITISH MEDICAL JOURNAL, 2021, 374
  • [45] SARS-CoV-2 Infection and COVID-19 in Children
    Waghmare, Alpana
    Hijano, Diego R.
    RHEUMATIC DISEASE CLINICS OF NORTH AMERICA, 2025, 51 (01) : 139 - 156
  • [46] Retracted papers on SARS-CoV-2 and COVID-19
    Cortegiani, Andrea
    Catalisano, Giulia
    Ippolito, Mariachiara
    Giarratano, Antonino
    Absalom, Anthony R.
    Einav, Sharon
    BRITISH JOURNAL OF ANAESTHESIA, 2021, 126 (04) : E155 - E156
  • [47] SARS-CoV-2 (COVID-19) and the Endocrine System
    Lundholm, Michelle D.
    Poku, Caroline
    Emanuele, Nicholas
    Emanuele, Mary Ann
    Lopez, Norma
    JOURNAL OF THE ENDOCRINE SOCIETY, 2020, 4 (11) : 1 - 13
  • [48] Research Response to SARS-CoV-2/COVID-19
    Burger, Charles D. y
    Mikhail, Amanda E.
    Orenstein, Robert
    Ebbert, Jon O.
    Vergidis, Paschalis
    Badley, Andrew D.
    MAYO CLINIC PROCEEDINGS, 2020, 95 (09) : S52 - S55
  • [49] SARS-CoV-2 (COVID-19) superspreader events
    Majra, Dasha
    Benson, Jayme
    Pitts, Jennifer
    Stebbing, Justin
    JOURNAL OF INFECTION, 2021, 82 (01) : 36 - 40
  • [50] Epidemiology of SARS-CoV-2 infection and COVID-19
    Salzberger, B.
    Buder, F.
    Lampl, B.
    Ehrenstein, B.
    Hitzenbichler, F.
    Hanses, F.
    INTERNIST, 2020, 61 (08): : 782 - 788