Retrieval and Investigation of Data on SARS-CoV-2 and COVID-19 Using Bioinformatics Approach

被引:22
|
作者
Fahmi, Muhamad [1 ,2 ]
Kharisma, Viol Dhea [3 ,4 ,5 ]
Ansori, Arif Nur Muhammad [6 ,7 ]
Ito, Masahiro [1 ,2 ]
机构
[1] Ritsumeikan Univ, Grad Sch Life Sci, Adv Life Sci Program, Shiga, Japan
[2] Universal Sci Educ & Res Network USERN, Systemat Review & Metaanal Expert Grp SRMEG, Kusatsu, Japan
[3] Brawijaya Univ, Fac Mathemat & Nat Sci, Dept Biol, Master Program Biol, Malang, Indonesia
[4] Generasi Biol Indonesia GENBINESIA Fdn, Div Mol Biol & Genet, Computat Virol & Complex Sci Res Unit, Gresik, Indonesia
[5] Universal Sci Educ & Res Network USERN, Systemat Review & Metaanal Expert Grp SRMEG, Malang, Indonesia
[6] Airlangga Univ, Fac Vet Med, Doctoral Program Vet Sci, Kampus C Univ Airlangga, Surabaya, Indonesia
[7] Universal Sci Educ & Res Network USERN, Systemat Review & Metaanal Expert Grp SRMEG, Surabaya, Indonesia
来源
关键词
COVID-19; Databases; Information hubs; Molecular evolution; Phylogenetic inference; SARS-CoV-2; Vaccine design; MULTIPLE SEQUENCE ALIGNMENT; HEPATITIS-C VIRUS; B-CELL EPITOPES; DATA-BANK PDB; HLA-DR; CORONAVIRUS; PREDICTION; PROTEIN; RECOMBINATION; MECHANISMS;
D O I
10.1007/978-3-030-63761-3_47
中图分类号
R1 [预防医学、卫生学];
学科分类号
1004 ; 120402 ;
摘要
Sudden emergence and a rapid outbreak of SARS-CoV-2 accompanied by a devastating impact on the economy and public health has driven extensive scientific mobilization to study and elucidate the various associated concerns about SARS-CoV-2. Bioinformatics plays a crucial role in addressing and providing solutions to questions about SARS-CoV-2. It helps shorten the duration for the vaccine development process and the discovery of potential clinical interventions through the simulation and information retrieval, and the development of well-ordered information hubs and resources, which are essential to derive data and meaningful findings from the current massive information about SARS-CoV-2. Advanced algorithms in this field also provide approaches that are essential to elucidate the relationship, origin, and evolutionary process of SARS-CoV-2. Here, we report essential bioinformatics entities, such as database and platform development, molecular evolution and phylogenetic analyses, and vaccine designs, that are useful to solve the SARS-CoV-2 conundrum.
引用
收藏
页码:839 / 857
页数:19
相关论文
共 50 条
  • [31] Pandemie durch SARS-CoV-2/Covid-19
    Matthias Schrappe
    Hedwig François-Kettner
    Franz Knieps
    Holger Pfaff
    K. Püschel
    Gerd Glaeske
    Medizinrecht, 2020, 38 (8) : 637 - 644
  • [32] Computation to Fight SARS-CoV-2 (COVID-19)
    Brogi, Simone
    Calderone, Vincenzo
    COMPUTATION, 2023, 11 (09)
  • [33] SARS-CoV-2 reinfection and COVID-19 severity
    Nguyen, Nhu Ngoc
    Houhamdi, Linda
    Hoang, Van Thuan
    Delerce, Jeremy
    Delorme, Lea
    Colson, Philippe
    Brouqui, Philippe
    Fournier, Pierre-Edouard
    Raoult, Didier
    Gautret, Philippe
    EMERGING MICROBES & INFECTIONS, 2022, 11 (01) : 894 - 901
  • [34] SARS-CoV-2/COVID-19: a primer for cardiologists
    A. A. F. de Vries
    Netherlands Heart Journal, 2020, 28 : 366 - 383
  • [35] Decoding Covid-19 with the SARS-CoV-2 Genome
    Phoebe Ellis
    Ferenc Somogyvári
    Dezső P. Virok
    Michela Noseda
    Gary R. McLean
    Current Genetic Medicine Reports, 2021, 9 : 1 - 12
  • [36] In Focus: SARS-CoV-2 and the COVID-19 Pandemic
    Giunta, Riccardo E.
    HANDCHIRURGIE MIKROCHIRURGIE PLASTISCHE CHIRURGIE, 2020, 52 (03) : 220 - 220
  • [37] SARS-CoV-2 Targets and COVID-19 Vaccines
    Currier, Arthur W.
    Jeshurin, Madeline C.
    Sampson, Valerie B.
    COVID, 2021, 1 (03): : 608 - 621
  • [38] SARS-CoV-2/COVID-19: a primer for cardiologists
    de Vries, A. A. F.
    NETHERLANDS HEART JOURNAL, 2020, 28 (7-8) : 366 - 383
  • [39] SARS-CoV-2: Remarks on the COVID-19 Pandemic
    Piasecki, Egbert
    ARCHIVUM IMMUNOLOGIAE ET THERAPIAE EXPERIMENTALIS, 2020, 68 (06)
  • [40] SARS-CoV-2 Infection and COVID-19 in Children
    Waghmare, Alpana
    Hijano, Diego R.
    CLINICS IN CHEST MEDICINE, 2023, 44 (02) : 359 - 371