Non-Markovian data-driven modeling of single-cell motility

被引:33
|
作者
Mitterwallner, Bernhard G. [1 ,2 ]
Schreiber, Christoph [1 ,2 ]
Daldrop, Jan O. [1 ,2 ]
Raedler, Joachim O. [1 ,2 ]
Netz, Roland R. [1 ,2 ]
机构
[1] Free Univ Berlin, Fachbereich Phys, D-14195 Berlin, Germany
[2] Ludwig Maximilians Univ Munchen, Phys Fak, D-80539 Munich, Germany
基金
欧盟地平线“2020”; 欧洲研究理事会;
关键词
RANDOM MOTION; MIGRATION; DYNAMICS;
D O I
10.1103/PhysRevE.101.032408
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Trajectories of human breast cancer cells moving on one-dimensional circular tracks are modeled by the non-Markovian version of the Langevin equation that includes an arbitrary memory function. When averaged over cells, the velocity distribution exhibits spurious non-Gaussian behavior, while single cells are characterized by Gaussian velocity distributions. Accordingly, the data are described by a linear memory model which includes different random walk models that were previously used to account for various aspects of cell motility such as migratory persistence, non-Markovian effects, colored noise, and anomalous diffusion. The memory function is extracted from the trajectory data without restrictions or assumptions, thus making our approach truly data driven, and is used for unbiased single-cell comparison. The cell memory displays time-delayed single-exponential negative friction, which clearly distinguishes cell motion from the simple persistent random walk model and suggests a regulatory feedback mechanism that controls cell migration. Based on the extracted memory function we formulate a generalized exactly solvable cell migration model which indicates that negative friction generates cell persistence over long timescales. The nonequilibrium character of cell motion is investigated by mapping the non-Markovian Langevin equation with memory onto a Markovian model that involves a hidden degree of freedom and is equivalent to the underdamped active Ornstein-Uhlenbeck process.
引用
收藏
页数:17
相关论文
共 50 条
  • [1] Data-driven non-Markovian closure models
    Kondrashov, Dmitri
    Chekroun, Mickael D.
    Ghil, Michael
    [J]. PHYSICA D-NONLINEAR PHENOMENA, 2015, 297 : 33 - 55
  • [2] Data-driven classification of individual cells by their non-Markovian motion
    Klimek, Anton
    Mondal, Debasmita
    Block, Stephan
    Sharma, Prerna
    Netz, Roland R.
    [J]. BIOPHYSICAL JOURNAL, 2024, 123 (10) : 1173 - 1183
  • [3] Data-driven construction of stochastic reduced dynamics encoded with non-Markovian features
    She, Zhiyuan
    Ge, Pei
    Lei, Huan
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2023, 158 (03):
  • [4] Benchmarking data-driven filtering for denoising of TCRpMHC single-cell data
    Montemurro, Alessandro
    Povlsen, Helle Rus
    Jessen, Leon Eyrich
    Nielsen, Morten
    [J]. SCIENTIFIC REPORTS, 2023, 13 (01):
  • [5] Benchmarking data-driven filtering for denoising of TCRpMHC single-cell data
    Alessandro Montemurro
    Helle Rus Povlsen
    Leon Eyrich Jessen
    Morten Nielsen
    [J]. Scientific Reports, 13 (1)
  • [6] Data-driven assessment of dimension reduction quality for single-cell omics data
    Dong, Xiaoru
    Bacher, Rhonda
    [J]. PATTERNS, 2022, 3 (03):
  • [7] A Hierarchical, Data-Driven Approach to Modeling Single-Cell Populations Predicts Latent Causes of Cell-To-Cell Variability
    Loos, Carolin
    Moeller, Katharina
    Froehlich, Fabian
    Hucho, Tim
    Hasenauer, Jan
    [J]. CELL SYSTEMS, 2018, 6 (05) : 593 - +
  • [8] Markovian and Non-Markovian Modeling of Membrane Dynamics with Milestoning
    Cardenas, Alfredo E.
    Elber, Ron
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2016, 120 (33): : 8208 - 8216
  • [9] Modeling Active Non-Markovian Oscillations
    Tucci, G.
    Roldan, E.
    Gambassi, A.
    Belousov, R.
    Berger, F.
    Alonso, R. G.
    Hudspeth, A. J.
    [J]. PHYSICAL REVIEW LETTERS, 2022, 129 (03)
  • [10] Modeling for Non-Markovian Quantum Systems
    Xue, Shibei
    Nguyen, Thien
    James, Matthew R.
    Shabani, Alireza
    Ugrinovskii, Valery
    Petersen, Ian R.
    [J]. IEEE TRANSACTIONS ON CONTROL SYSTEMS TECHNOLOGY, 2020, 28 (06) : 2564 - 2571