Non-Markovian data-driven modeling of single-cell motility

被引:33
|
作者
Mitterwallner, Bernhard G. [1 ,2 ]
Schreiber, Christoph [1 ,2 ]
Daldrop, Jan O. [1 ,2 ]
Raedler, Joachim O. [1 ,2 ]
Netz, Roland R. [1 ,2 ]
机构
[1] Free Univ Berlin, Fachbereich Phys, D-14195 Berlin, Germany
[2] Ludwig Maximilians Univ Munchen, Phys Fak, D-80539 Munich, Germany
基金
欧盟地平线“2020”; 欧洲研究理事会;
关键词
RANDOM MOTION; MIGRATION; DYNAMICS;
D O I
10.1103/PhysRevE.101.032408
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Trajectories of human breast cancer cells moving on one-dimensional circular tracks are modeled by the non-Markovian version of the Langevin equation that includes an arbitrary memory function. When averaged over cells, the velocity distribution exhibits spurious non-Gaussian behavior, while single cells are characterized by Gaussian velocity distributions. Accordingly, the data are described by a linear memory model which includes different random walk models that were previously used to account for various aspects of cell motility such as migratory persistence, non-Markovian effects, colored noise, and anomalous diffusion. The memory function is extracted from the trajectory data without restrictions or assumptions, thus making our approach truly data driven, and is used for unbiased single-cell comparison. The cell memory displays time-delayed single-exponential negative friction, which clearly distinguishes cell motion from the simple persistent random walk model and suggests a regulatory feedback mechanism that controls cell migration. Based on the extracted memory function we formulate a generalized exactly solvable cell migration model which indicates that negative friction generates cell persistence over long timescales. The nonequilibrium character of cell motion is investigated by mapping the non-Markovian Langevin equation with memory onto a Markovian model that involves a hidden degree of freedom and is equivalent to the underdamped active Ornstein-Uhlenbeck process.
引用
收藏
页数:17
相关论文
共 50 条
  • [42] NON-MARKOVIAN ANALYSIS OF COHERENCE IN A DRIVEN 2-LEVEL ATOM
    BRINATI, JR
    MIZRAHI, SS
    PRATAVIERA, GA
    [J]. PHYSICAL REVIEW A, 1994, 50 (04): : 3304 - 3311
  • [43] NON-MARKOVIAN EQUATIONS OF MOTION FOR A DRIVEN 2-LEVEL ATOM
    ZAIDI, HR
    [J]. PHYSICAL REVIEW A, 1987, 36 (08): : 3897 - 3903
  • [44] Non-Markovian dynamics of a damped driven two-state system
    Haikka, P.
    Maniscalco, S.
    [J]. PHYSICAL REVIEW A, 2010, 81 (05)
  • [45] Linear response theory for periodically driven systems with non-Markovian effects
    Shen, H. Z.
    Xu, Shuang
    Li, Hong
    Wu, S. L.
    Yi, X. X.
    [J]. OPTICS LETTERS, 2018, 43 (12) : 2852 - 2855
  • [46] Unconventional single-photon blockade in non-Markovian systems
    Shen, H. Z.
    Shang, Cheng
    Zhou, Y. H.
    Yi, X. X.
    [J]. PHYSICAL REVIEW A, 2018, 98 (02)
  • [47] Cooperative data-driven modeling
    Dekhovich, Aleksandr
    Turan, O. Taylan
    Yi, Jiaxiang
    Bessa, Miguel A.
    [J]. COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING, 2023, 417
  • [48] Single photon quantum filtering using non-Markovian embeddings
    Gough, John E.
    James, Matthew R.
    Nurdin, Hendra I.
    [J]. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 2012, 370 (1979): : 5408 - 5421
  • [49] Non-Markovian dynamics of few emitters in a laser-driven cavity
    Pagel, D.
    Fehske, H.
    [J]. PHYSICAL REVIEW A, 2017, 96 (04)
  • [50] Kraus map for non-Markovian quantum dynamics driven by a thermal reservoir
    van Wonderen, A. J.
    Suttorp, L. G.
    [J]. EPL, 2013, 102 (06)