Insights from ab initio quantum chemical calculations into the preferred tautomeric forms and binding affinities to CDK2 of substituted pyrazolopyridines

被引:7
|
作者
Duca, JS [1 ]
Madison, VS [1 ]
机构
[1] Schering Plough Res Inst, Dept Struct Chem, Kenilworth, NJ 07033 USA
关键词
ab initio calculations; pyrazolopyridines; free energy; basicity; binding affinity; CDK2; hydrogen-bond strength;
D O I
10.1002/bip.20218
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ab initio calculations were employed to compute pKa values and tautomer properties of a series of substituted pyrazolopyridines. The results show that the neutral 1H tautomer predominates, but upon protonation this proton migrates to give the preferred charged [2H, 7H] tautoiner. The basicity of the pyrazolopyridines is correlated with the electron donating capability, of the 4-substituent. Ab initio free energy calculations were also used to identify determinants of binding affinity,for some recently published pyrazolopyridine inhibitors ofCDK2. Hydrogen-bonding affinity. may be one important component of binding strength. (c) 2005 Wiley Periodicals, Inc.
引用
收藏
页码:312 / 318
页数:7
相关论文
共 50 条
  • [41] Insights on the Binding of Thioflavin Derivative Markers to Amyloid-Like Fibril Models from Quantum Chemical Calculations
    Ali-Torres, Jorge
    Rimola, Albert
    Rodriguez-Rodriguez, Cristina
    Rodriguez-Santiago, Luis
    Sodupe, Mariona
    JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (22): : 6674 - 6680
  • [42] Kitaev interactions between j=1/2 moments in honeycomb Na2IrO3 are large and ferromagnetic: insights from ab initio quantum chemistry calculations
    Katukuri, Vamshi M.
    Nishimoto, S.
    Yushankhai, V.
    Stoyanova, A.
    Kandpal, H.
    Choi, Sungkyun
    Coldea, R.
    Rousochatzakis, I.
    Hozoi, L.
    van den Brink, Jeroen
    NEW JOURNAL OF PHYSICS, 2014, 16
  • [44] Geometric structures and dipole moments of Pbn (n=13-18) clusters from ab initio quantum-chemical calculations
    Lei, Yong-Min
    Zhao, Li-Xia
    Feng, Xiao-Juan
    Zhang, Meng
    Luo, You-Hua
    JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2010, 948 (1-3): : 11 - 14
  • [45] Mixed ab initio quantum mechanical and Monte Carlo calculations of secondary emission from SiO2 nanoclusters
    Taioli, Simone
    Simonucci, Stefano
    Calliari, Lucia
    Filippi, Massimiliano
    Dapor, Maurizio
    PHYSICAL REVIEW B, 2009, 79 (08)
  • [46] Mechanistic Insights into Radical-Mediated Oxidation of Tryptophan from ab Initio Quantum Chemistry Calculations and QM/MM Molecular Dynamics Simulations
    Wood, Geoffrey P. F.
    Sreedhara, Alavattam
    Moore, Jamie M.
    Wang, John
    Trout, Bernhardt L.
    JOURNAL OF PHYSICAL CHEMISTRY A, 2016, 120 (18): : 2926 - 2939
  • [47] (HX)2 species (X = F through At) in the groups of the periodic system:: MP2 and CCSD(T) ab initio quantum chemical calculations
    Burda, JV
    Hobza, P
    Zahradnik, R
    CHEMICAL PHYSICS LETTERS, 1998, 288 (01) : 20 - 24
  • [48] Acyclic and cyclic forms of the radicals HO4⋅ CH3O4⋅ and C2H5O4·: ab initio quantum chemical calculations
    I. V. Trushkov
    M. M. Silaev
    N. D. Chuvylkin
    Russian Chemical Bulletin, 2009, 58 : 489 - 492
  • [49] Acyclic and cyclic forms of the radicals HO4•, CH3O4•, and C2H5O4•: ab initio quantum chemical calculations
    Trushkov, I. V.
    Silaev, M. M.
    Chuvylkin, N. D.
    RUSSIAN CHEMICAL BULLETIN, 2009, 58 (03) : 489 - 492
  • [50] Molecular structure, spectroscopic characterization of (S)-2-Oxopyrrolidin-1-yl Butanamide and ab initio, DFT based quantum chemical calculations
    Ramya, T.
    Gunasekaran, S.
    Ramkumaar, G. R.
    SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2015, 149 : 132 - 142