A Review: Computational Approaches to Design sgRNA of CRISPR-Cas9

被引:3
|
作者
Nasir, Mohsin Ali [1 ]
Nawaz, Samia [1 ]
Huang, Jian [1 ]
机构
[1] Univ Elect Sci & Technol China, Ctr Informat Biol, 2006 Xiyuan Ave, Chengdu 611731, Peoples R China
基金
中国国家自然科学基金;
关键词
CRISPR-Cas9; sgRNA; computational tools; off-target effects; on-target; protein; GUIDE-RNA DESIGN; GENOME-WIDE ANALYSIS; OFF-TARGET CLEAVAGE; DNA-CLEAVAGE; STRUCTURAL BASIS; CAS SYSTEMS; WEB TOOL; B-DNA; FUNCTIONAL-CHARACTERIZATION; MOLECULAR-DYNAMICS;
D O I
10.2174/1574893616666210601105553
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Clustered regularly interspaced short palindromic repeats along with CRISPR-associated protein mechanisms preserve the memory of previous experiences with DNA invaders, in particular spacers that are embedded in CRISPR arrays between coordinate repeats. There has been a fast progression in the comprehension of this immune system and its implementations; however, there are numerous points of view that anticipate explanations to make the field an energetic research zone. The efficiency of CRISPR-Cas depends upon well-considered single guide RNA; for this purpose, many bioinformatics methods and tools are created to support the design of greatly active and precise single guide RNA. Insilico single guide RNA architecture is a crucial point for effective gene editing by means of the CRISPR technique. Persistent attempts have been made to improve in-silico single guide RNA formulation having great on-target effectiveness and decreased off-target effects. This review offers a summary of the CRISPR computational tools to help different researchers pick a specific tool for their work according to pros and cons, along with new thoughts to make new computational tools to overcome all existing limitations.
引用
收藏
页码:2 / 18
页数:17
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