Integrative analysis;
Network analysis;
Multi-scale;
Multi-omics;
Patient stratification;
Drug target;
Precision medicine;
Big data;
Lung cancer;
SYSTEMS BIOLOGY;
EXPRESSION;
GENE;
TOOL;
D O I:
10.1007/978-3-319-27057-9_16
中图分类号:
TP [自动化技术、计算机技术];
学科分类号:
0812 ;
摘要:
Cancer research is emerging as a complex orchestration of genomics, data-sciences, and network-sciences. For improving cancer diagnosis and treatment strategies, data across multiple scales, from molecules like DNA, RNA, metabolites, to the population, need to be integrated. This requires handling of large volumes of high complexity "Omics" data, requiring powerful computational algorithms and mathematical tools. Here we present an integrative analytics approach for cancer genomics. This approach takes the multi-scale biological interactions as key considerations for model development. We demonstrate the use of this approach on a publicly available lung cancer dataset collected for 109 individuals from an 18 years long clinical study. From this data, we discovered novel disease markers and drug targets that were validated using peer-reviewed literature. These results demonstrate the power of big data analytics for deriving disease actionable insight.
机构:
Univ Paris Saclay, Cent Supelec, Math & Informat Complexite & Syst, F-91190 Gif Sur Yvette, FranceUniv Paris Saclay, Cent Supelec, Math & Informat Complexite & Syst, F-91190 Gif Sur Yvette, France
Viaud, Gautier
Mayilvahanan, Prasanna
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h-index: 0
机构:
Univ Paris Saclay, Cent Supelec, Math & Informat Complexite & Syst, F-91190 Gif Sur Yvette, FranceUniv Paris Saclay, Cent Supelec, Math & Informat Complexite & Syst, F-91190 Gif Sur Yvette, France
机构:
Guangxi Normal Univ, Guangxi Key Lab Multisource Informat Min & Secur, Guilin 541004, Peoples R China
Guangxi Normal Univ, Coll Comp Sci & Informat Technol, Guilin 541004, Peoples R ChinaGuangxi Normal Univ, Guangxi Key Lab Multisource Informat Min & Secur, Guilin 541004, Peoples R China
Wu, Jingli
Cai, Qirong
论文数: 0引用数: 0
h-index: 0
机构:
Guangxi Normal Univ, Coll Comp Sci & Informat Technol, Guilin 541004, Peoples R ChinaGuangxi Normal Univ, Guangxi Key Lab Multisource Informat Min & Secur, Guilin 541004, Peoples R China
Cai, Qirong
Wang, Jinyan
论文数: 0引用数: 0
h-index: 0
机构:
Guangxi Normal Univ, Guangxi Key Lab Multisource Informat Min & Secur, Guilin 541004, Peoples R China
Guangxi Normal Univ, Coll Comp Sci & Informat Technol, Guilin 541004, Peoples R ChinaGuangxi Normal Univ, Guangxi Key Lab Multisource Informat Min & Secur, Guilin 541004, Peoples R China
Wang, Jinyan
Liao, Yuanxiu
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h-index: 0
机构:
Guangxi Normal Univ, Coll Comp Sci & Informat Technol, Guilin 541004, Peoples R ChinaGuangxi Normal Univ, Guangxi Key Lab Multisource Informat Min & Secur, Guilin 541004, Peoples R China
机构:
Capital Med Univ, Sch Biomed Engn, Beijing, Peoples R China
Capital Med Univ, Beijing Key Lab Fundamental Res Biomech Clin Appl, Beijing, Peoples R ChinaCapital Med Univ, Sch Biomed Engn, Beijing, Peoples R China
Hua, L.
Zheng, W. Y.
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机构:
Capital Med Univ, Sch Biomed Engn, Beijing, Peoples R China
Capital Med Univ, Beijing Key Lab Fundamental Res Biomech Clin Appl, Beijing, Peoples R ChinaCapital Med Univ, Sch Biomed Engn, Beijing, Peoples R China
Zheng, W. Y.
Xia, H.
论文数: 0引用数: 0
h-index: 0
机构:
Capital Med Univ, Sch Biomed Engn, Beijing, Peoples R China
Capital Med Univ, Beijing Key Lab Fundamental Res Biomech Clin Appl, Beijing, Peoples R ChinaCapital Med Univ, Sch Biomed Engn, Beijing, Peoples R China
Xia, H.
Zhou, P.
论文数: 0引用数: 0
h-index: 0
机构:
Capital Med Univ, Sch Biomed Engn, Beijing, Peoples R China
Capital Med Univ, Beijing Key Lab Fundamental Res Biomech Clin Appl, Beijing, Peoples R ChinaCapital Med Univ, Sch Biomed Engn, Beijing, Peoples R China