Structural Insight of the Full-Length Ros Protein: A Prototype of the Prokaryotic Zinc-Finger Family

被引:12
|
作者
D'Abrosca, Gianluca [1 ]
Paladino, Antonella [1 ,2 ]
Baglivo, Ilaria [1 ]
Russo, Luigi [1 ]
Sassano, Marica [1 ]
Grazioso, Rinaldo [1 ]
Iacovino, Rosa [1 ]
Pirone, Luciano [3 ]
Pedone, Emilia Maria [3 ]
Pedone, Paolo Vincenzo [1 ]
Isernia, Carla [1 ]
Fattorusso, Roberto [1 ]
Malgieri, Gaetano [1 ]
机构
[1] Univ Campania Luigi Vanvitelli, Dept Environm Biol & Pharmaceut Sci & Technol, Via Vivaldi 43, I-81100 Caserta, Italy
[2] CNR, SCITEC, Via Mario Bianco 9, I-20131 Milan, Italy
[3] CNR, Inst Biostruct & Bioimaging, Via Mezzocannone 16, I-80134 Naples, Italy
关键词
SINORHIZOBIUM-MELILOTI MUCR; LEGUMINOSARUM BV TRIFOLII; DNA-BINDING DOMAIN; H-NS; GALACTOGLUCAN BIOSYNTHESIS; STRUCTURE PREDICTION; SECONDARY STRUCTURE; MOLECULAR-DYNAMICS; REGULATOR MUCR; EXOPOLYSACCHARIDE;
D O I
10.1038/s41598-020-66204-5
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Ros/MucR is a widespread family of bacterial zinc-finger (ZF) containing proteins that integrate multiple functions such as virulence, symbiosis and/or cell cycle transcription. NMR solution structure of Ros DNA-binding domain (region 56-142, i.e. Ros87) has been solved by our group and shows that the prokaryotic ZF domain shows interesting structural and functional features that differentiate it from its eukaryotic counterpart as it folds in a significantly larger zinc-binding globular domain. We have recently proposed a novel functional model for this family of proteins suggesting that they may act as H-NS-'like' gene silencers. Indeed, the N-terminal region of this family of proteins appears to be responsible for the formation of functional oligomers. No structural characterization of the Ros N-terminal domain (region 1-55) is available to date, mainly because of serious solubility problems of the full-length protein. Here we report the first structural characterization of the N-terminal domain of the prokaryotic ZF family examining by means of MD and NMR the structural preferences of the full-length Ros protein from Agrobacterium tumefaciens.
引用
收藏
页数:10
相关论文
共 50 条
  • [21] Structural Mechanism of Barriers to Interspecies Seeding Transmissibility of Full-Length Prion Protein Amyloid
    Ma, Tao
    Deng, Jing
    Ma, Shaojie
    Zhao, Weijing
    Chang, Ziwei
    Yu, Kunqian
    Yang, Jun
    CHEMBIOCHEM, 2019, 20 (21) : 2757 - 2766
  • [22] Dissecting CNBP, a zinc-finger protein required for neural crest development, in its structural and functional domains
    Armas, Pablo
    Agueero, Tristan H.
    Borgognone, Mariana
    Aybar, Manuel J.
    Calcaterra, Nora B.
    JOURNAL OF MOLECULAR BIOLOGY, 2008, 382 (04) : 1043 - 1056
  • [23] Structural studies on a protein-binding zinc-finger domain of eos reveal both similarities and differences to classical zinc fingers
    Westman, BJ
    Perdomo, J
    Matthews, JM
    Crossley, M
    Mackay, JP
    BIOCHEMISTRY, 2004, 43 (42) : 13318 - 13327
  • [24] A NOVEL X-LINKED MEMBER OF THE HUMAN ZINC-FINGER PROTEIN GENE FAMILY - ISOLATION, MAPPING, AND EXPRESSION
    MARINO, M
    ARCHIDIACONO, N
    FRANZE, A
    ROSATI, M
    ROCCHI, M
    BALLABIO, A
    GRIMALDI, G
    MAMMALIAN GENOME, 1993, 4 (05) : 252 - 257
  • [25] Structural Basis for the Slow Dark Recovery of a Full-Length LOV Protein from Pseudomonas putida
    Circolone, Franco
    Granzin, Joachim
    Jentzsch, Katrin
    Drepper, Thomas
    Jaeger, Karl-Erich
    Willbold, Dieter
    Krauss, Ulrich
    Batra-Safferling, Renu
    JOURNAL OF MOLECULAR BIOLOGY, 2012, 417 (04) : 362 - 374
  • [26] Mechanistic and Structural Characterization of Full-Length, Aggregation-Prone, TDP-43 Protein
    Esposto, Josephine
    Martic, Sanela
    FASEB JOURNAL, 2021, 35
  • [27] Protein-DNA binding correlates with structural thermostability for the full-length human p53 protein
    Nichols, NM
    Matthews, KS
    BIOCHEMISTRY, 2001, 40 (13) : 3847 - 3858
  • [28] The prokaryotic Cys2His2 zinc-finger adopts a novel fold as revealed by the NMR structure of Agrobacterium tumefaciens Ros DNA-binding domain
    Malgieri, Gaetano
    Russo, Luigi
    Esposito, Sabrina
    Baglivo, Ilaria
    Zaccaro, Laura
    Peclone, Emilia M.
    Di Blasio, Benedetto
    Isernia, Carla
    Pedone, Paolo V.
    Fattorusso, Roberto
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (44) : 17341 - 17346
  • [29] MOLECULAR-CLONING OF A ZINC-FINGER PROTEIN BELONGING TO THE GLI-KRUPPEL FAMILY AND ITS EXPRESSION IN THE SILK GLAND
    XU, PX
    XU, X
    SUZUKI, Y
    DEVELOPMENT GROWTH & DIFFERENTIATION, 1995, 37 (02) : 149 - 155
  • [30] Computational Insight Into the Structural Organization of Full-Length Toll-Like Receptor 4 Dimer in a Model Phospholipid Bilayer
    Patra, Mahesh Chandra
    Kwon, Hyuk-Kwon
    Batool, Maria
    Choi, Sangdun
    FRONTIERS IN IMMUNOLOGY, 2018, 9