Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects

被引:170
|
作者
Kole, Chittaranjan [1 ]
Muthamilarasan, Mehanathan [2 ]
Henry, Robert [3 ]
Edwards, David [4 ]
Sharma, Rishu [5 ]
Abberton, Michael [6 ]
Batley, Jacqueline [7 ]
Bentley, Alison [8 ]
Blakeney, Michael [9 ]
Bryant, John [10 ]
Cai, Hongwei [11 ,12 ]
Cakir, Mehmet [13 ]
Cseke, Leland J. [14 ]
Cockram, James [8 ]
de Oliveira, Antonio Costa [15 ]
De Pace, Ciro [16 ]
Dempewolf, Hannes [17 ]
Ellison, Shelby [18 ]
Gepts, Paul [19 ]
Greenland, Andy [8 ]
Hall, Anthony [20 ]
Hori, Kiyosumi [21 ]
Hughes, Stephen [22 ]
Humphreys, Mike W. [23 ]
Iorizzo, Massimo [18 ]
Ismail, Abdelbagi M. [24 ]
Marshall, Athole [23 ]
Mayes, Sean [25 ]
Nguyen, Henry T. [26 ,27 ]
Ogbonnaya, Francis C. [28 ]
Ortiz, Rodomiro [29 ]
Paterson, Andrew H. [30 ]
Simon, Philipp W. [31 ]
Tohme, Joe [32 ]
Tuberosa, Roberto [33 ]
Valliyodan, Babu [26 ,27 ]
Varshney, Rajeev K. [34 ]
Wullschleger, Stan D. [35 ]
Yano, Masahiro [36 ]
Prasad, Manoj [2 ]
机构
[1] Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, India
[2] Natl Inst Plant Genome Res, Dept Plant Mol Genet & Genom, New Delhi 110067, India
[3] Univ Queensland, Queensland Alliance Agr & Food Innovat, St Lucia, Qld, Australia
[4] Univ Queensland, Sch Agr & Food Sci, Brisbane, Qld, Australia
[5] Bidhan Chandra Krishi Viswavidyalaya, Fac Agr, Dept Plant Pathol, Mohanpur, India
[6] Int Inst Trop Agr, Genet Resources Ctr, Ibadan, Nigeria
[7] Univ Queensland, Ctr Integrated Legume Res, Brisbane, Qld, Australia
[8] Natl Inst Agr Bot, John Bingham Lab, Cambridge, England
[9] Univ Western Australia, Sch Law, Perth, WA 6009, Australia
[10] Univ Exeter, Hatherly Labs, CLES, Exeter, Devon, England
[11] Japan Grassland Agr & Forage Seed Assoc, Forage Crop Res Inst, Nasushiobara, Japan
[12] China Agr Univ, Coll Agron & Biotechnol, Dept Plant Genet & Breeding, Beijing 100094, Peoples R China
[13] Murdoch Univ, Sch Biol Sci & Biotechnol, Fac Sci & Engn, Murdoch, WA 6150, Australia
[14] Univ Alabama, Dept Biol Sci, Huntsville, AL 35899 USA
[15] Univ Fed Pelotas, Plant Genom & Breeding Ctr, Pelotas, Brazil
[16] Univ Tuscia, Dept Agr Forests Nat & Energy, Viterbo, Italy
[17] Global Crop Divers Trust, Bonn, Germany
[18] Univ Wisconsin, Dept Hort, Madison, WI 53706 USA
[19] Univ Calif Davis, Dept Plant Sci, Sect Crop & Ecosyst Sci, Davis, CA 95616 USA
[20] Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA
[21] Natl Inst Agrobiol Sci, Agrogen Res Ctr, Tsukuba, Ibaraki, Japan
[22] Univ Exeter, Exeter, Devon, England
[23] Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth, Ceredigion, Wales
[24] Int Rice Res Inst, Manila 1099, Philippines
[25] Crops Future, Biotechnol & Crop Genet, Semenyih, Malaysia
[26] Univ Missouri, Natl Ctr Soybean Biotechnol, Columbia, MO USA
[27] Univ Missouri, Div Plant Sci, Columbia, MO USA
[28] Grains Res & Dev Corp, Kingston, ACT, Australia
[29] Swedish Univ Agr Sci, Dept Plant Breeding, Sundvagen, Sweden
[30] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA
[31] Univ Wisconsin, Dept Hort, USDA, ARS, Madison, WI 53706 USA
[32] Ctr Int Agr Trop, Agrobiodivers & Biotechnol Project, Cali, Colombia
[33] Dept Agr Sci, Bologna, Italy
[34] Int Crops Res Inst Semi Arid Trop, Ctr Excellence Genom, Patancheru 502324, Andhra Pradesh, India
[35] Oak Ridge Natl Lab, Div Environm Sci, Climate Change Sci Inst, Oak Ridge, TN 37831 USA
[36] Natl Agr & Food Res Org, Inst Crop Sci, Tsukuba, Ibaraki, Japan
来源
基金
英国生物技术与生命科学研究理事会;
关键词
climate change; crop improvement; stress tolerance; breeding; genomics; QUANTITATIVE TRAIT LOCI; SCALE GENOTYPING APPLICATIONS; ADVENTITIOUS ROOT-FORMATION; ABSCISIC-ACID ACCUMULATION; DROUGHT-RESISTANCE; FOXTAIL MILLET; FROST-TOLERANCE; DRAFT GENOME; MAPPING QTLS; GRAIN-YIELD;
D O I
10.3389/fpls.2015.00563
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to increase further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops, which can withstand broad-spectrum stresses such as drought, heat, cold, salinity, flood, submergence and pests, thus helping to deliver increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives toward identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have proven helpful in enhancing the stress adaptation of crop plants, and recent advances in high-throughput sequencing and phenotyping platforms have transformed molecular breeding to genomics-assisted breeding (GAB). In view of this, the present review elaborates the progress and prospects of GAB for improving climate change resilience in crops, which is likely to play an ever increasing role in the effort to ensure global food security.
引用
收藏
页数:16
相关论文
共 50 条
  • [31] A Bioinformatics Pipeline to Identify a Subset of SNPs for Genomics-Assisted Potato Breeding
    Selga, Catja
    Koc, Alexander
    Chawade, Aakash
    Ortiz, Rodomiro
    PLANTS-BASEL, 2021, 10 (01): : 1 - 14
  • [32] Genomics-assisted breeding for boosting crop improvement in pigeonpea (Cajanus cajan)
    Pazhamala, Lekha
    Saxena, Rachit K.
    Singh, Vikas K.
    Sameerkumar, C. V.
    Kumar, Vinay
    Sinha, Pallavi
    Patel, Kishan
    Obala, Jimmy
    Kaoneka, Seleman R.
    Tongoona, P.
    Shimelis, Hussein A.
    Gangarao, N. V. P. R.
    Odeny, Damaris
    Rathore, Abhishek
    Dharmaraj, P. S.
    Yamini, K. N.
    Varshney, Rajeev K.
    FRONTIERS IN PLANT SCIENCE, 2015, 6
  • [33] The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding
    Shirasawa, Kenta
    Isuzugawa, Kanji
    Ikenaga, Mitsunobu
    Saito, Yutaro
    Yamamoto, Toshiya
    Hirakawa, Hideki
    Isobe, Sachiko
    DNA RESEARCH, 2017, 24 (05) : 499 - 508
  • [34] Smart breeding approaches in post-genomics era for developing climate-resilient food crops
    Naqvi, Rubab Zahra
    Siddiqui, Hamid Anees
    Mahmood, Muhammad Arslan
    Najeebullah, Syed
    Ehsan, Aiman
    Azhar, Maryam
    Farooq, Muhammad
    Amin, Imran
    Asad, Shaheen
    Mukhtar, Zahid
    Mansoor, Shahid
    Asif, Muhammad
    FRONTIERS IN PLANT SCIENCE, 2022, 13
  • [35] A targeted genotyping-by-sequencing tool (Rapture) for genomics-assisted breeding in oat
    Wubishet A. Bekele
    Asuka Itaya
    Brian Boyle
    Weikai Yan
    Jennifer Mitchell Fetch
    Nicholas A. Tinker
    Theoretical and Applied Genetics, 2020, 133 : 653 - 664
  • [36] Simultaneous selection for grain yield and protein content in genomics-assisted wheat breeding
    Sebastian Michel
    Franziska Löschenberger
    Christian Ametz
    Bernadette Pachler
    Ellen Sparry
    Hermann Bürstmayr
    Theoretical and Applied Genetics, 2019, 132 : 1745 - 1760
  • [37] Simultaneous selection for grain yield and protein content in genomics-assisted wheat breeding
    Michel, Sebastian
    Loeschenberger, Franziska
    Ametz, Christian
    Pachler, Bernadette
    Sparry, Ellen
    Buerstmayr, Hermann
    THEORETICAL AND APPLIED GENETICS, 2019, 132 (06) : 1745 - 1760
  • [38] Evaluation of the genetic architecture of tofu traits in soybean towards genomics-assisted breeding
    Kurasch, Alena K.
    Leiser, Willmar L.
    Bachteler, Kristina
    Miersch, Martin
    Hahn, Volker
    Wuerschum, Tobias
    PLANT BREEDING, 2018, 137 (06) : 873 - 882
  • [39] A targeted genotyping-by-sequencing tool (Rapture) for genomics-assisted breeding in oat
    Bekele, Wubishet A.
    Itaya, Asuka
    Boyle, Brian
    Yan, Weikai
    Fetch, Jennifer Mitchell
    Tinker, Nicholas A.
    THEORETICAL AND APPLIED GENETICS, 2020, 133 (02) : 653 - 664
  • [40] Genomics-assisted characterization of a breeding collection of Apios americana, an edible tuberous legume
    Belamkar, Vikas
    Farmer, Andrew D.
    Weeks, Nathan T.
    Kalberer, Scott R.
    Blackmon, William J.
    Cannon, Steven B.
    SCIENTIFIC REPORTS, 2016, 6