Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects

被引:170
|
作者
Kole, Chittaranjan [1 ]
Muthamilarasan, Mehanathan [2 ]
Henry, Robert [3 ]
Edwards, David [4 ]
Sharma, Rishu [5 ]
Abberton, Michael [6 ]
Batley, Jacqueline [7 ]
Bentley, Alison [8 ]
Blakeney, Michael [9 ]
Bryant, John [10 ]
Cai, Hongwei [11 ,12 ]
Cakir, Mehmet [13 ]
Cseke, Leland J. [14 ]
Cockram, James [8 ]
de Oliveira, Antonio Costa [15 ]
De Pace, Ciro [16 ]
Dempewolf, Hannes [17 ]
Ellison, Shelby [18 ]
Gepts, Paul [19 ]
Greenland, Andy [8 ]
Hall, Anthony [20 ]
Hori, Kiyosumi [21 ]
Hughes, Stephen [22 ]
Humphreys, Mike W. [23 ]
Iorizzo, Massimo [18 ]
Ismail, Abdelbagi M. [24 ]
Marshall, Athole [23 ]
Mayes, Sean [25 ]
Nguyen, Henry T. [26 ,27 ]
Ogbonnaya, Francis C. [28 ]
Ortiz, Rodomiro [29 ]
Paterson, Andrew H. [30 ]
Simon, Philipp W. [31 ]
Tohme, Joe [32 ]
Tuberosa, Roberto [33 ]
Valliyodan, Babu [26 ,27 ]
Varshney, Rajeev K. [34 ]
Wullschleger, Stan D. [35 ]
Yano, Masahiro [36 ]
Prasad, Manoj [2 ]
机构
[1] Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, India
[2] Natl Inst Plant Genome Res, Dept Plant Mol Genet & Genom, New Delhi 110067, India
[3] Univ Queensland, Queensland Alliance Agr & Food Innovat, St Lucia, Qld, Australia
[4] Univ Queensland, Sch Agr & Food Sci, Brisbane, Qld, Australia
[5] Bidhan Chandra Krishi Viswavidyalaya, Fac Agr, Dept Plant Pathol, Mohanpur, India
[6] Int Inst Trop Agr, Genet Resources Ctr, Ibadan, Nigeria
[7] Univ Queensland, Ctr Integrated Legume Res, Brisbane, Qld, Australia
[8] Natl Inst Agr Bot, John Bingham Lab, Cambridge, England
[9] Univ Western Australia, Sch Law, Perth, WA 6009, Australia
[10] Univ Exeter, Hatherly Labs, CLES, Exeter, Devon, England
[11] Japan Grassland Agr & Forage Seed Assoc, Forage Crop Res Inst, Nasushiobara, Japan
[12] China Agr Univ, Coll Agron & Biotechnol, Dept Plant Genet & Breeding, Beijing 100094, Peoples R China
[13] Murdoch Univ, Sch Biol Sci & Biotechnol, Fac Sci & Engn, Murdoch, WA 6150, Australia
[14] Univ Alabama, Dept Biol Sci, Huntsville, AL 35899 USA
[15] Univ Fed Pelotas, Plant Genom & Breeding Ctr, Pelotas, Brazil
[16] Univ Tuscia, Dept Agr Forests Nat & Energy, Viterbo, Italy
[17] Global Crop Divers Trust, Bonn, Germany
[18] Univ Wisconsin, Dept Hort, Madison, WI 53706 USA
[19] Univ Calif Davis, Dept Plant Sci, Sect Crop & Ecosyst Sci, Davis, CA 95616 USA
[20] Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA
[21] Natl Inst Agrobiol Sci, Agrogen Res Ctr, Tsukuba, Ibaraki, Japan
[22] Univ Exeter, Exeter, Devon, England
[23] Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth, Ceredigion, Wales
[24] Int Rice Res Inst, Manila 1099, Philippines
[25] Crops Future, Biotechnol & Crop Genet, Semenyih, Malaysia
[26] Univ Missouri, Natl Ctr Soybean Biotechnol, Columbia, MO USA
[27] Univ Missouri, Div Plant Sci, Columbia, MO USA
[28] Grains Res & Dev Corp, Kingston, ACT, Australia
[29] Swedish Univ Agr Sci, Dept Plant Breeding, Sundvagen, Sweden
[30] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA
[31] Univ Wisconsin, Dept Hort, USDA, ARS, Madison, WI 53706 USA
[32] Ctr Int Agr Trop, Agrobiodivers & Biotechnol Project, Cali, Colombia
[33] Dept Agr Sci, Bologna, Italy
[34] Int Crops Res Inst Semi Arid Trop, Ctr Excellence Genom, Patancheru 502324, Andhra Pradesh, India
[35] Oak Ridge Natl Lab, Div Environm Sci, Climate Change Sci Inst, Oak Ridge, TN 37831 USA
[36] Natl Agr & Food Res Org, Inst Crop Sci, Tsukuba, Ibaraki, Japan
来源
基金
英国生物技术与生命科学研究理事会;
关键词
climate change; crop improvement; stress tolerance; breeding; genomics; QUANTITATIVE TRAIT LOCI; SCALE GENOTYPING APPLICATIONS; ADVENTITIOUS ROOT-FORMATION; ABSCISIC-ACID ACCUMULATION; DROUGHT-RESISTANCE; FOXTAIL MILLET; FROST-TOLERANCE; DRAFT GENOME; MAPPING QTLS; GRAIN-YIELD;
D O I
10.3389/fpls.2015.00563
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to increase further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops, which can withstand broad-spectrum stresses such as drought, heat, cold, salinity, flood, submergence and pests, thus helping to deliver increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives toward identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have proven helpful in enhancing the stress adaptation of crop plants, and recent advances in high-throughput sequencing and phenotyping platforms have transformed molecular breeding to genomics-assisted breeding (GAB). In view of this, the present review elaborates the progress and prospects of GAB for improving climate change resilience in crops, which is likely to play an ever increasing role in the effort to ensure global food security.
引用
收藏
页数:16
相关论文
共 50 条
  • [1] Increasing Fusarium verticillioides resistance in maize by genomics-assisted breeding: Methods, progress, and prospects
    Yufang Xu
    Zhirui Zhang
    Ping Lu
    Ruiqi Li
    Peipei Ma
    Jianyu Wu
    Tao Li
    Huiyong Zhang
    TheCropJournal, 2023, 11 (06) : 1626 - 1641
  • [2] Increasing Fusarium verticillioides resistance in maize by genomics-assisted breeding: Methods, progress, and prospects
    Xu, Yufang
    Zhang, Zhirui
    Lu, Ping
    Li, Ruiqi
    Ma, Peipei
    Wu, Jianyu
    Li, Tao
    Zhang, Huiyong
    CROP JOURNAL, 2023, 11 (06): : 1626 - 1641
  • [3] Exploiting Wild Relatives for Genomics-assisted Breeding of Perennial Crops
    Migicovsky, Zoe
    Myles, Sean
    FRONTIERS IN PLANT SCIENCE, 2017, 8
  • [4] Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects
    Abhishek Bohra
    Manish K. Pandey
    Uday C. Jha
    Balwant Singh
    Indra P. Singh
    Dibendu Datta
    Sushil K. Chaturvedi
    N. Nadarajan
    Rajeev K. Varshney
    Theoretical and Applied Genetics, 2014, 127 : 1263 - 1291
  • [5] Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics
    Varshney, Rajeev K.
    Mohan, S. Murali
    Gaur, Pooran M.
    Gangarao, N. V. P. R.
    Pandey, Manish K.
    Bohra, Abhishek
    Sawargaonkar, Shrikant L.
    Chitikineni, Annapurna
    Kimurto, Paul K.
    Janila, Pasupuleti
    Saxena, K. B.
    Fikre, Asnake
    Sharma, Mamta
    Rathore, Abhishek
    Pratap, Aditya
    Tripathi, Shailesh
    Datta, Subhojit
    Chaturvedi, S. K.
    Mallikarjuna, Nalini
    Anuradha, G.
    Babbar, Anita
    Choudhary, Arbind K.
    Mhase, M. B.
    Bharadwaj, Ch.
    Mannur, D. M.
    Harer, P. N.
    Guo, Baozhu
    Liang, Xuanqiang
    Nadarajan, N.
    Gowda, C. L. L.
    BIOTECHNOLOGY ADVANCES, 2013, 31 (08) : 1120 - 1134
  • [6] Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects
    Bohra, Abhishek
    Pandey, Manish K.
    Jha, Uday C.
    Singh, Balwant
    Singh, Indra P.
    Datta, Dibendu
    Chaturvedi, Sushil K.
    Nadarajan, N.
    Varshney, Rajeev K.
    THEORETICAL AND APPLIED GENETICS, 2014, 127 (06) : 1263 - 1291
  • [7] Progress in Marker-Assisted Selection to Genomics-Assisted Breeding in Tomato
    Tiwari, Jagesh Kumar
    Yerasu, Suresh Reddy
    Rai, Nagendra
    Singh, Dhananjaya P.
    Singh, Achuit K.
    Karkute, Suhas G.
    Singh, Prabhakar M.
    Behera, Tusar K.
    CRITICAL REVIEWS IN PLANT SCIENCES, 2022, 41 (05) : 321 - 350
  • [8] Genomics-assisted breeding: The next-generation wheat breeding era
    Sun, Congwei
    Hu, Huiting
    Cheng, Yongzhen
    Yang, Xi
    Qiao, Qi
    Wang, Canguan
    Zhang, Leilei
    Chen, Daiying
    Zhao, Simin
    Dong, Zhongdong
    Chen, Feng
    PLANT BREEDING, 2023, 142 (03) : 259 - 268
  • [9] Genomics-assisted breeding in fruit trees
    Iwata, Hiroyoshi
    Minamikawa, Mai F.
    Kajiya-Kanegae, Hiromi
    Ishimori, Motoyuki
    Hayashi, Takeshi
    BREEDING SCIENCE, 2016, 66 (01) : 100 - 115
  • [10] Feature Review Designing Future Crops: Genomics-Assisted Breeding Comes of Age
    Varshney, Rajeev K.
    Bohra, Abhishek
    Yu, Jianming
    Graner, Andreas
    Zhang, Qifa
    Sorrells, Mark E.
    TRENDS IN PLANT SCIENCE, 2021, 26 (06) : 631 - 649