Regulation of Bacterial Metabolism by Small RNAs Using Diverse Mechanisms

被引:77
|
作者
Bobrovskyy, Maksym [1 ]
Vanderpool, Carin K. [1 ]
机构
[1] Univ Illinois, Dept Microbiol, Urbana, IL 61801 USA
来源
关键词
Hfq; RNase E; riboswitch; SgrS; Spot; 42; CRC GLOBAL REGULATOR; CARBON CATABOLITE REPRESSION; SM-LIKE PROTEIN; CARBOHYDRATE PHOSPHOTRANSFERASE SYSTEMS; PSEUDOMONAS-FLUORESCENS CHA0; ESCHERICHIA-COLI MUTANTS; BINDING SMALL RNA; MESSENGER-RNA; BACILLUS-SUBTILIS; SOLUBLE-RNA;
D O I
10.1146/annurev-genet-111212-133445
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Bacteria live in many dynamic environments with alternating cycles of feast or famine that have resulted in the evolution of mechanisms to quickly alter their metabolic capabilities. Such alterations often involve complex regulatory networks that modulate expression of genes involved in nutrient uptake and metabolism. A great number of protein regulators of metabolism have been characterized in depth. However, our ever-increasing understanding of the roles played by RNA regulators has revealed far greater complexity to regulation of metabolism in bacteria. Here, we review the mechanisms and functions of selected bacterial RNA regulators and discuss their importance in modulating nutrient uptake as well as primary and secondary metabolic pathways.
引用
收藏
页码:209 / 232
页数:24
相关论文
共 50 条
  • [31] Small RNAs for defence and regulation in archaea
    Marchfelder, Anita
    Fischer, Susan
    Brendel, Jutta
    Stoll, Britta
    Maier, Lisa-Katharina
    Jaeger, Dominik
    Prasse, Daniela
    Plagens, Andre
    Schmitz, Ruth A.
    Randau, Lennart
    EXTREMOPHILES, 2012, 16 (05) : 685 - 696
  • [32] The regulation of genes and genomes by small RNAs
    Ambros, Victor
    Chen, Xuemei
    DEVELOPMENT, 2007, 134 (09): : 1635 - 1641
  • [33] Small RNAs and regulation of transposons in plants
    Ito, Hidetaka
    GENES & GENETIC SYSTEMS, 2013, 88 (01) : 3 - 7
  • [34] The role of RNases in the regulation of small RNAs
    Saramago, Margarida
    Barria, Catia
    dos Santos, Ricardo F.
    Silva, Ines J.
    Pobre, Vania
    Domingues, Susana
    Andrade, Jose M.
    Viegas, Sandra C.
    Arraiano, Cecilia M.
    CURRENT OPINION IN MICROBIOLOGY, 2014, 18 : 105 - 115
  • [35] Common functions for diverse small RNAs of land plants
    Axtell, Michael J.
    Snyder, Jo Ann
    Bartell, David P.
    PLANT CELL, 2007, 19 (06): : 1750 - 1769
  • [36] SMALL RNAS IN THE PROKARYOTES - A GROWING LIST OF DIVERSE ROLES
    INOUYE, M
    DELIHAS, N
    CELL, 1988, 53 (01) : 5 - 7
  • [37] Small RNAs for defence and regulation in archaea
    Anita Marchfelder
    Susan Fischer
    Jutta Brendel
    Britta Stoll
    Lisa-Katharina Maier
    Dominik Jäger
    Daniela Prasse
    André Plagens
    Ruth A. Schmitz
    Lennart Randau
    Extremophiles, 2012, 16 : 685 - 696
  • [38] Potential regulation of small RNAs on bacterial function activities in pig farm wastewater treatment plants
    Yiwen Yang
    Sicheng Xing
    Sumin Li
    Yajing Niu
    Cheng Li
    Tuoxin Huang
    Xindi Liao
    Journal of Environmental Sciences, 2020, 91 (05) : 292 - 300
  • [39] Potential regulation of small RNAs on bacterial function activities in pig farm wastewater treatment plants
    Yang, Yiwen
    Xing, Sicheng
    Li, Sumin
    Niu, Yajing
    Li, Cheng
    Huang, Tuoxin
    Liao, Xindi
    JOURNAL OF ENVIRONMENTAL SCIENCES, 2020, 91 : 292 - 300
  • [40] Comparative genomics of small RNAs in bacterial genomes
    Luban, Stan
    Kihara, Daisuke
    OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, 2007, 11 (01) : 58 - 73