Aromatic SOFAST-HMBC for proteins at natural 13C abundance

被引:1
|
作者
Vallet, Alicia [1 ]
Favier, Adrien [1 ]
Brutscher, Bernhard [1 ]
机构
[1] Univ Grenoble Alpes, CEA, CNRS, IBS, F-38000 Grenoble, France
关键词
SOFAST; Protein; Aromatics; Resonance assignment; Longitudinal relaxation optimization; Cryogenic probe; High field NMR; 2-DIMENSIONAL NMR EXPERIMENTS; RESONANCE ASSIGNMENT; SIDE-CHAINS; SPECTROSCOPY; RESIDUES; ACIDS;
D O I
10.1016/j.jmr.2019.01.009
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We propose here SOFAST-HMBC as a new complementary NMR tool for aromatic side chain assignment of protein samples at natural C-13 abundance. The characteristic peak patterns detected in SOFAST-HMBC for each aromatic side chain allow straightforward assignment of all protons and carbons (including quaternary ones) of the aromatic ring, and for tyrosine and phenylalanine, connection to the CB of the aliphatic chain. The performance of SOFAST-HMBC is demonstrated for three small proteins (7-14 kDa) at millimolar sample concentration using modern high-field NMR instruments equipped with cryogenically cooled probes. Despite the low amount of NMR-active C-13 nuclei in these samples, H-1-C-13 multiple-bond correlation spectra of good quality were obtained in reasonable experimental times of typically less than 24 h. (C) 2019 Elsevier Inc. All rights reserved.
引用
收藏
页码:95 / 102
页数:8
相关论文
共 50 条
  • [11] Accurate Quantitative Isotopic 13C NMR Spectroscopy for the Determination of the Intramolecular Distribution of 13C in Glucose at Natural Abundance
    Gilbert, Alexis
    Silvestre, Virginie
    Robins, Richard J.
    Remaud, Gerald S.
    ANALYTICAL CHEMISTRY, 2009, 81 (21) : 8978 - 8985
  • [12] 13C detected 15N-13C coupling measurements at the natural isotopic abundance
    Kupce, Eriks
    Wrackmeyer, Bernd
    JOURNAL OF MAGNETIC RESONANCE, 2017, 279 : 68 - 73
  • [13] Unexpected fractionation in site-specific 13C isotopic distribution detected by quantitative 13C NMR at natural abundance
    Botosoa, Eliot P.
    Caytan, Elsa
    Silvestre, Virginie
    Robins, Richard J.
    Akoka, Serge
    Remaud, Gérald S.
    Journal of the American Chemical Society, 2008, 130 (02): : 414 - 415
  • [14] Unexpected fractionation in site-specific 13C isotopic distribution detected by quantitative 13C NMR at natural abundance
    Botosoa, Eliot P.
    Caytan, Elsa
    Silvestre, Virginie
    Robins, Richard J.
    Akoka, Serge
    Remaud, Gerald S.
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (02) : 414 - +
  • [15] 13C and 15N natural abundance of the soil microbial biomass
    Dijkstra, Paul
    Ishizu, Ayaka
    Doucett, Richard
    Hart, Stephen C.
    Schwartz, Egbert
    Menyailo, Oleg V.
    Hungate, Bruce A.
    SOIL BIOLOGY & BIOCHEMISTRY, 2006, 38 (11): : 3257 - 3266
  • [16] In vivo Tracing of Pulmonary Exogenous Surfactant by the 13C Natural Abundance Approach
    Giambelluca, S.
    Ricci, F.
    Simonato, M.
    Vedovelli, L.
    Correani, A.
    Casiraghi, C.
    Storti, M.
    Mersanne, A.
    Cogo, P.
    Salomone, F.
    Carnielli, V. P.
    NEONATOLOGY, 2019, 115 (04) : 453 - 453
  • [17] Maize rhizosphere priming: field estimates using 13C natural abundance
    Amit Kumar
    Yakov Kuzyakov
    Johanna Pausch
    Plant and Soil, 2016, 409 : 87 - 97
  • [18] Decomposition of Dairy Manure Assessed in the Field by Monitoring Natural Abundance of 13C
    Carpenter-Boggs, Lynne A.
    Carlson, Bryan R.
    Higgins, Stewart S.
    Stoeckle, Claudio O.
    SOIL SCIENCE SOCIETY OF AMERICA JOURNAL, 2014, 78 (06) : 1949 - 1952
  • [19] Dynamics of 13C natural abundance in wood decomposing fungi and their ecophysiological implications
    Kohzu, A
    Miyajima, T
    Tateishi, T
    Watanabe, T
    Takahashi, M
    Wada, E
    SOIL BIOLOGY & BIOCHEMISTRY, 2005, 37 (09): : 1598 - 1607
  • [20] Maize rhizosphere priming: field estimates using 13C natural abundance
    Kumar, Amit
    Kuzyakov, Yakov
    Pausch, Johanna
    PLANT AND SOIL, 2016, 409 (1-2) : 87 - 97