Measurement of the Docking Time of a DNA Molecule onto a Solid-State Nanopore

被引:55
|
作者
Kowalczyk, Stefan W. [1 ]
Dekker, Cees [1 ]
机构
[1] Delft Univ Technol, Dept Bionanosci, Kavli Inst Nanosci, NL-2628 CJ Delft, Netherlands
基金
欧洲研究理事会;
关键词
Nanopore; access resistance; DNA; translocation; IONIC CURRENT; TRANSLOCATION; TRANSPORT;
D O I
10.1021/nl301719a
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
We present measurements of the change in ionic conductance due to double-stranded (ds) DNA translocation through small (6 nm diameter) nanopores at low salt (100 rnM KCl). At both low (<200 mV) and high (>600 mV) voltages we observe a current enhancement during DNA translocation, similar to earlier reports. Intriguingly, however, in the intermediate voltage range, we observe a new type of composite events, where within each single event the current first decreases and then increases. From the voltage dependence of the magnitude and timing of these current changes, we conclude that the current decrease is caused by the docking of the DNA random coil onto the nanopore. Unexpectedly, we find that the docking time is exponentially dependent on voltage (t proportional to e(-V/V0)). We discuss a physical picture where the docking time is set by the time that a DNA end needs to move from a random location within the DNA coil to the nanopore. Upon entrance of the pore, the current subsequently increases due to enhanced flow of counterions along the DNA. Interestingly, these composite events thus allow to independently measure the actual translocation time as well as the docking time before translocation.
引用
收藏
页码:4159 / 4163
页数:5
相关论文
共 50 条
  • [41] Radial dependence of DNA translocation velocity in a solid-state nanopore
    Binquan Luan
    [J]. Microchimica Acta, 2016, 183 : 995 - 1002
  • [42] Radial dependence of DNA translocation velocity in a solid-state nanopore
    Luan, Binquan
    [J]. MICROCHIMICA ACTA, 2016, 183 (03) : 995 - 1002
  • [43] Solid-state nanopore sensors
    Xue, Liang
    Yamazaki, Hirohito
    Ren, Ren
    Wanunu, Meni
    Ivanov, Aleksandar P.
    Edel, Joshua B.
    [J]. NATURE REVIEWS MATERIALS, 2020, 5 (12) : 931 - 951
  • [44] Threading Immobilized DNA through a Solid-State Nanopore with a Tip
    Hyun, Changbae
    Rollings, Ryan
    Kaur, Harpreet
    Li, Jiali
    [J]. BIOPHYSICAL JOURNAL, 2013, 104 (02) : 522A - 522A
  • [45] Docking and Activity of DNA Polymerase on Solid-State Nanopores
    Li, Shiyu
    Zeng, Shuangshuang
    Wen, Chenyu
    Zhang, Zhen
    Hjort, Klas
    Zhang, Shi-Li
    [J]. ACS SENSORS, 2022, 7 (05) : 1476 - 1483
  • [46] Solid-state and biological nanopore for real-time sensing of single chemical and sequencing of DNA
    Haque, Farzin
    Li, Jinghong
    Wu, Hai-Chen
    Liang, Xing-Jie
    Guo, Peixuan
    [J]. NANO TODAY, 2013, 8 (01) : 56 - 74
  • [47] Solid-State Nanopore Time-of-Flight Mass Spectrometer
    Tsutsui, Makusu
    Yokota, Kazumichi
    Arima, Akihide
    He, Yuhui
    Kawai, Tomoji
    [J]. ACS SENSORS, 2019, 4 (11): : 2974 - 2979
  • [48] Single-Molecule Bonds Characterized by Solid-State Nanopore Force Spectroscopy
    Tabard-Cossa, Vincent
    Wiggin, Matthew
    Trivedi, Dhruti
    Jetha, Nahid N.
    Dwyer, Jason R.
    Marziali, Andre
    [J]. ACS NANO, 2009, 3 (10) : 3009 - 3014
  • [49] A CMOS Enhanced Solid-State Nanopore Based Single Molecule Detection Platform
    Chen, Chinhsuan
    Yemenicioglu, Sukru
    Uddin, Ashfaque
    Corgliano, Ellie
    Theogarajan, Luke
    [J]. 2013 35TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC), 2013, : 164 - 167
  • [50] Improved Measurement of Proteins Using a Solid-State Nanopore Coupled with a Hydrogel
    Acharya, Shiv
    Jiang, Ann
    Kuo, Chance
    Nazarian, Reyhaneh
    Li, Katharine
    Ma, Anthony
    Siegal, Brian
    Toh, Christopher
    Schmidt, Jacob J.
    [J]. ACS SENSORS, 2020, 5 (02): : 370 - 376