Parameter estimation and Stability of equilibrium of Gene Regulatory Network by Piecewise Multi-affine approach

被引:0
|
作者
Shen, Jianwei [1 ,2 ]
Wang, Yi [2 ]
Liu, Zengrong [2 ]
Lang, Rongling [3 ]
机构
[1] Xuchang Univ, Dept Math, Xuchang 461000, Peoples R China
[2] Shanghai Univ, Inst Syst Biol, Shanghai 200444, Peoples R China
[3] Beijing Univ Aeronaut & Astronaut, Sch Elect & Informat Engn, Beijing 100083, Peoples R China
基金
中国博士后科学基金;
关键词
Stability; Gene Regulatory Network; Piecewise Multi-affine approach;
D O I
暂无
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
In this paper, we developed a new method to estimate parameter area and analyze the stability of equilibrium for gene regulatory network by piecewise multi-affine (PMA) approach. For the PMA function, it is continuous and the thresholds of its partition the phase space into many subspace. In every subspace, the model can be transformed into linear model, so the stable and unstable manifolds of equilibrium points can be determined analytically and stability and bifurcation can be obtained easily and the corresponding parameter areas can be obtained. This method allows us to estimate and tune parameter for a kind of high dimensional gene network and analyze the dynamical behaviors of its. In the end, Repressilator model, as an example, illustrates the validity of the method in this paper.
引用
收藏
页码:36 / +
页数:2
相关论文
共 50 条
  • [21] Stability analysis of piecewise affine systems with multi-model predictive control
    Petsagkourakis, Panagiotis
    Heath, William Paul
    Theodoropoulos, Constantinos
    [J]. AUTOMATICA, 2020, 111
  • [22] Formal analysis of piecewise affine systems under parameter uncertainty with application to gene networks
    Yordanov, Boyan
    Belta, Calin
    [J]. 2008 AMERICAN CONTROL CONFERENCE, VOLS 1-12, 2008, : 2767 - +
  • [23] Time-optimal control of piecewise affine bistable gene-regulatory networks
    Augier, Nicolas
    Yabo, Agustin G.
    [J]. INTERNATIONAL JOURNAL OF ROBUST AND NONLINEAR CONTROL, 2023, 33 (09) : 4967 - 4988
  • [24] An input-output simulation approach to controlling multi-affine systems for linear temporal logic specifications
    Sun, Yajuan
    Lin, Hai
    Chen, Ben M.
    [J]. INTERNATIONAL JOURNAL OF CONTROL, 2012, 85 (10) : 1464 - 1476
  • [25] Parameter estimation for gene regulatory networks: a two-stage MCMC Bayesian approach
    Xue, Niannan
    Pan, Wei
    Guo, Yike
    [J]. 2016 38TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC), 2016, : 1476 - 1479
  • [26] Experimental Design for Parameter Estimation of Gene Regulatory Networks
    Steiert, Bernhard
    Raue, Andreas
    Timmer, Jens
    Kreutz, Clemens
    [J]. PLOS ONE, 2012, 7 (07):
  • [27] Stability of sampled-data piecewise affine systems: A time-delay approach
    Samadi, Behzad
    Rodrigues, Luis
    [J]. AUTOMATICA, 2009, 45 (09) : 1995 - 2001
  • [28] Limit cycles in piecewise-affine gene network models with multiple interaction loops
    Farcot, Etienne
    Gouze, Jean-Luc
    [J]. INTERNATIONAL JOURNAL OF SYSTEMS SCIENCE, 2010, 41 (01) : 119 - 130
  • [29] An approach to network parameter estimation in power system state estimation
    Logic, N
    Heydt, GT
    [J]. ELECTRIC POWER COMPONENTS AND SYSTEMS, 2005, 33 (11) : 1191 - 1201
  • [30] Time-optimal control of piecewise affine bistable gene-regulatory networks: preliminary results
    Augier, Nicolas
    Yabo, Agustin Gabriel
    [J]. IFAC PAPERSONLINE, 2021, 54 (05): : 205 - 210