Intracranial Aneurysm Biomarker Candidates Identified by a Proteome-Wide Study

被引:29
|
作者
Sharma, Tanavi [1 ]
Datta, Keshava K. [2 ]
Kumar, Munish [1 ]
Dey, Gourav [2 ]
Khan, Aafaque Ahmad [2 ]
Mangalaparthi, Kiran Kumar [2 ]
Saharan, Poonam [1 ]
Chinnapparaj, Shobia [1 ]
Aggarwal, Ashish [3 ]
Singla, Navneet [3 ]
Ghosh, Sujata [4 ]
Rawat, Amit [5 ]
Dhandapani, Sivashanmugam [3 ]
Salunke, Pravin [3 ]
Chhabra, Rajesh [3 ]
Singh, Dalbir [6 ]
Takkar, Aastha [7 ]
Gupta, Sunil K. [3 ]
Prasad, Thottethodi Subrahmanya Keshava [2 ,8 ]
Gowda, Harsha [2 ,8 ,9 ]
Mukherjee, Kanchan K. [3 ]
Pandey, Akhilesh [2 ,9 ,10 ,11 ]
Bhagat, Hemant [1 ]
机构
[1] Post Grad Inst Med Educ & Res, Div Neuroanesthesia, Dept Anesthesia & Intens Care, Chandigarh 160012, India
[2] Inst Bioinformat, Int Tech Pk, Bangalore, Karnataka, India
[3] Post Grad Inst Med Educ & Res, Dept Neurosurg, Chandigarh, India
[4] Post Grad Inst Med Educ & Res, Dept Expt Med & Biotechnol, Chandigarh, India
[5] Post Grad Inst Med Educ & Res, Pediat Allergy & Immunol Unit, Adv Pediat Ctr, Chandigarh, India
[6] Post Grad Inst Med Educ & Res, Dept Forens Med, Chandigarh, India
[7] Post Grad Inst Med Educ & Res, Dept Neurol, Chandigarh, India
[8] Yenepoya Res Ctr, Ctr Syst Biol & Mol Med, Mangalore, India
[9] Manipal Acad Higher Educ, Manipal, India
[10] Mayo Clin, Dept Lab Med & Pathol, Rochester, MN USA
[11] Mayo Clin, Ctr Individualized Med, Rochester, MN 55905 USA
关键词
cerebral vasospasm; intracranial aneurysm; mass spectrometry; proteomics; subarachnoid hemorrhage; biomarker; C-REACTIVE PROTEIN; SUBARACHNOID HEMORRHAGE; CEREBRAL VASOSPASM; INFLAMMATION; HEMODYNAMICS; CONTRIBUTES; SUPEROXIDE; DEFICIENCY; WALL;
D O I
10.1089/omi.2020.0057
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The scientific basis of intracranial aneurysm (IA) formation, its rupture and further development of cerebral vasospasm is incompletely understood. Aberrant protein expression may drive structural alterations of vasculature found in IA. Deciphering the molecular mechanisms underlying these events will lead to identification of early detection biomarkers and in turn, improved treatment outcomes. To unravel differential protein expression in three clinical subgroups of IA patients: (1) unruptured aneurysm, (2) ruptured aneurysm without vasospasm, (3) ruptured aneurysm who developed vasospasm, we performed untargeted quantitative proteomic analysis of aneurysm tissue and serum samples from three subgroups of IA patients and control subjects. Candidate molecules were then validated in a larger cohort of patients using enzyme-linked immunosorbent assay. A total of 937 and 294 proteins were identified from aneurysm tissue and serum samples, respectively. Several proteins that are known to maintain structural integrity of vasculature were found to be dysregulated in the context of aneurysm.ORM1, a glycoprotein, was significantly upregulated in both tissue and serum samples of unruptured aneurysm patients. We employed a larger cohort of subjects (n = 26) and validatedORM1as a potential biomarker for screening of unruptured aneurysms. Samples from ruptured aneurysms with vasospasm showed significant upregulation ofMMP9, a protease, compared with ruptured aneurysms without vasospasm. We validatedMMP9as a potential biomarker for vasospasm in a larger cohort (n = 52). This study reports the first global proteomic analysis of the entire clinical spectrum of IA. Furthermore, this study suggestsORM1andMMP9as potential biomarkers for unruptured aneurysm and cerebral vasospasm, respectively.
引用
收藏
页码:483 / 492
页数:10
相关论文
共 50 条
  • [21] Human Brain Proteome-Wide Association Study of Depression Identified 24 Proteins as Tractable Targets for Further Mechanistic Studies
    Wingo, Thomas S.
    Liu, Yue
    Lori, Adriana
    Gerasimov, Ekaterina S.
    Duong, Duc M.
    Dammer, Eric
    Ressler, Kerry
    Lah, James
    Bennett, David
    Seyfried, Nicholas T.
    Levey, Allan I.
    Wingo, Aliza
    BIOLOGICAL PSYCHIATRY, 2020, 87 (09) : S183 - S183
  • [22] Mapping Proteome-wide Targets of Glyphosate in Mice
    Ford, Breanna
    Bateman, Leslie A.
    Gutierrez-Palominos, Leilani
    Park, Robin
    Nomura, Daniel K.
    CELL CHEMICAL BIOLOGY, 2017, 24 (02): : 133 - 140
  • [23] Proteome-wide identification of mycobacterial pupylation targets
    Poulsen, Christian
    Akhter, Yusuf
    Jeon, Amy Hye-Won
    Schmitt-Ulms, Gerold
    Meyer, Helmut E.
    Stefanski, Anja
    Stuehler, Kai
    Wilmanns, Matthias
    Song, Young-Hwa
    MOLECULAR SYSTEMS BIOLOGY, 2010, 6 : 386
  • [24] The Proteome-Wide Potential for Reversible Covalency at Cysteine
    Senkane, Kristine
    Vinogradova, Ekaterina V.
    Suciu, Radu M.
    Crowley, Vincent M.
    Zaro, Balyn W.
    Bradshaw, J. Michael
    Brameld, Ken A.
    Cravatt, Benjamin F.
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2019, 58 (33) : 11385 - 11389
  • [25] Omnibus proteome-wide association study identifies 43 risk genes for
    Hu, Tingyang
    Parrish, Randy L.
    Dai, Qile
    Buchman, Aron S.
    Tasaki, Shinya
    Bennett, David A.
    Seyfried, Nicholas T.
    Epstein, Michael P.
    Yang, Jingjing
    AMERICAN JOURNAL OF HUMAN GENETICS, 2024, 111 (09)
  • [26] Proteome-wide acetylation dynamics in human cells
    Kori, Yekaterina
    Sidoli, Simone
    Yuan, Zuo-Fei
    Lund, Peder J.
    Zhao, Xiaolu
    Garcia, Benjamin A.
    SCIENTIFIC REPORTS, 2017, 7
  • [27] A proteome-wide atlas of drug mechanism of action
    Mitchell, Dylan C. C.
    Kuljanin, Miljan
    Li, Jiaming
    Van Vranken, Jonathan G. G.
    Bulloch, Nathan
    Schweppe, Devin K. K.
    Huttlin, Edward L. L.
    Gygi, Steven P. P.
    NATURE BIOTECHNOLOGY, 2023, 41 (06) : 845 - +
  • [28] Vaccinomics-driven proteome-wide screening of Haemophilus influenzae for the prediction of common putative vaccine candidates
    Bibi, Naseeha
    Zaidi, Najam-Us-Sahar Sadaf
    Tahir, Muhammad
    Babar, Mustafeez Mujtaba
    CANADIAN JOURNAL OF MICROBIOLOGY, 2021, 67 (11) : 799 - 812
  • [29] Proteome-wide acetylation dynamics in human cells
    Yekaterina Kori
    Simone Sidoli
    Zuo-Fei Yuan
    Peder J. Lund
    Xiaolu Zhao
    Benjamin A. Garcia
    Scientific Reports, 7
  • [30] Proteome-wide discovery of mislocated proteins in cancer
    Lee, KiYoung
    Byun, Kyunghee
    Hong, Wonpyo
    Chuang, Han-Yu
    Pack, Chan-Gi
    Bayarsaikhan, Enkhjargal
    Paek, Sun Ha
    Kim, Hyosil
    Shin, Hye Young
    Ideker, Trey
    Lee, Bonghee
    GENOME RESEARCH, 2013, 23 (08) : 1283 - 1294