Conformational signatures of 13C chemical shifts in RNA ribose

被引:19
|
作者
Ohlenschlaeger, Oliver [1 ]
Haumann, Sebastian [1 ]
Ramachandran, Ramadurai [1 ]
Goerlach, Matthias [1 ]
机构
[1] Fritz Lipmann Inst, Leibniz Inst Age Res, Biomol NMR Spect, D-07745 Jena, Germany
关键词
NMR spectroscopy; RNA; chemical shift; Ribose; sugar pucker;
D O I
10.1007/s10858-008-9271-1
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The conformational dependence of (13)C chemical shift values of RNA riboses determined by liquid-state NMR spectroscopy was evaluated using data deposited for RNA structures in the RCSD and BMRB data bases. Results derived support the applicability of the canonical coordinates approach of Rossi and Harbison (J Magn Reson 151:1-8, 2001) in liquid-state NMR to assess the sugar pucker of ribose units in RNA.
引用
收藏
页码:139 / 142
页数:4
相关论文
共 50 条
  • [31] Analysis of ribose ring dynamics in RNA molecules using 13C NMR
    Johnson, JE
    Julien, KR
    Hoogstraten, CG
    FASEB JOURNAL, 2006, 20 (04): : A69 - A69
  • [32] Probing multiple effects on 15N, 13Cα, 13Cβ, and 13C′ chemical shifts in peptides using density functional theory
    Xu, XP
    Case, DA
    BIOPOLYMERS, 2002, 65 (06) : 408 - 423
  • [33] Modelling the 13C NMR chemical shifts of C84 fullerenes
    Heine, T
    Bühl, M
    Fowler, PW
    Seifert, G
    CHEMICAL PHYSICS LETTERS, 2000, 316 (5-6) : 373 - 380
  • [34] Remarks on GIAO-DFT predictions of 13C chemical shifts
    Dybiec, Katarzyna
    Gryff-Keller, Adam
    MAGNETIC RESONANCE IN CHEMISTRY, 2009, 47 (01) : 63 - 66
  • [35] Studies based on deuterium isotope effect on 13C chemical shifts
    Dziembowska, T
    Hansen, PE
    Rozwadowski, Z
    PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 2004, 45 (1-2) : 1 - 29
  • [36] 13C chemical shifts in octanethiols adsorbed on gold:: a theoretical study
    de Dios, AC
    Abraham, AE
    JOURNAL OF MOLECULAR STRUCTURE, 2002, 602 : 209 - 214
  • [37] Density functional theory on 13C NMR chemical shifts of fullerene
    Christy, P. Anto
    Peter, A. John
    Lee, Chang Woo
    SOLID STATE COMMUNICATIONS, 2018, 283 : 22 - 26
  • [38] Intrinsic long range deuterium isotope effects on 13C NMR chemical shifts as a conformational probe of benzene derivatives
    Vikic-Topic, D
    Novak, P
    Meic, Z
    Plavec, J
    Kovacek, D
    CROATICA CHEMICA ACTA, 1999, 72 (04) : 967 - 974
  • [39] A predictive tool for assessing 13C NMR chemical shifts of flavonoids
    Burns, Darcy C.
    Ellis, David A.
    March, Raymond E.
    MAGNETIC RESONANCE IN CHEMISTRY, 2007, 45 (10) : 835 - 845
  • [40] New relativistic computational schemes for 13C NMR chemical shifts
    D. O. Samultsev
    Yu. Yu. Rusakov
    L. B. Krivdin
    Russian Journal of Organic Chemistry, 2016, 52 : 1203 - 1204