Biomembranes in atomistic and coarse-grained simulations

被引:63
|
作者
Pluhackova, Kristyna [1 ]
Boeckmann, Rainer A. [1 ]
机构
[1] Univ Erlangen Nurnberg, Dept Biol, Computat Biol, D-91058 Erlangen, Germany
关键词
biomembranes; molecular dynamics simulation; coarse-grained simulation; multiscale modeling; membranes; resolution transformation; MOLECULAR-DYNAMICS SIMULATIONS; ATOM FORCE-FIELD; COMPUTER-SIMULATIONS; LIPID-BILAYER; BIOMOLECULAR SIMULATION; MEMBRANE-PROTEIN; HIGH-THROUGHPUT; HYDROPHOBIC MISMATCH; LIQUID WATER; SOFT MATTER;
D O I
10.1088/0953-8984/27/32/323103
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
The architecture of biological membranes is tightly coupled to the localization, organization, and function of membrane proteins. The organelle-specific distribution of lipids allows for the formation of functional microdomains (also called rafts) that facilitate the segregation and aggregation of membrane proteins and thus shape their function. Molecular dynamics simulations enable to directly access the formation, structure, and dynamics of membrane microdomains at the molecular scale and the specific interactions among lipids and proteins on timescales from picoseconds to microseconds. This review focuses on the latest developments of biomembrane force fields for both atomistic and coarse-grained molecular dynamics (MD) simulations, and the different levels of coarsening of biomolecular structures. It also briefly introduces scale-bridging methods applicable to biomembrane studies, and highlights selected recent applications.
引用
收藏
页数:19
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