Transferable Mixing of Atomistic and Coarse-Grained Water Models

被引:37
|
作者
Gonzalez, Humberto C. [1 ]
Darre, Leonardo [1 ,2 ]
Pantano, Sergio [1 ]
机构
[1] Inst Pasteur Montevideo, Montevideo 11400, Uruguay
[2] Kings Coll London, Dept Chem, London, England
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2013年 / 117卷 / 46期
关键词
PARTICLE MESH EWALD; MOLECULAR-DYNAMICS; FORCE-FIELD; DIELECTRIC-CONSTANT; SIMULATIONS; PRESSURE; RESOLUTION; ALGORITHM; DNA;
D O I
10.1021/jp4079579
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Dual-resolution approaches for molecular simulations combine the best of two worlds, providing atomic details in regions of interest and coarser but much faster descriptions of less-relevant parts of molecular systems. Given the abundance of water in biomolecular systems, reducing the computational cost of simulating bulk water without perturbing the solute's properties is a very attractive strategy. Here we show that the coarse-grained model for water called WatFour (WT4) can be combined with any of the three most used water models for atomistic simulations (SPC, TIP3P, and SPC/E) without modifying the characteristics of the atomistic solvent and solutes. The equivalence of fully atomistic and hybrid solvation approaches is assessed by comparative simulations of pure water, electrolyte solutions, and the beta 1 domain of streptococcal protein G, for which comparisons between experimental and calculated chemical shifts at C-13 alpha are equivalent.
引用
收藏
页码:14438 / 14448
页数:11
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