Assembly Mechanisms of RNA Pseudoknots are Determined by the Stabilities of the Constituent Secondary Structures

被引:0
|
作者
Cho, Samuel S. [1 ]
Thirumalai, D. [1 ]
机构
[1] Univ Maryland, College Pk, MD 20742 USA
关键词
D O I
10.1016/j.bpj.2009.12.2573
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
引用
下载
收藏
页码:472A / 473A
页数:2
相关论文
共 50 条
  • [41] Predicting structures and stabilities for H-type pseudoknots with interhelix loops
    Cao, Song
    Chen, Shi-Jie
    RNA, 2009, 15 (04) : 696 - 706
  • [42] IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming
    Sato, Kengo
    Kato, Yuki
    Hamada, Michiaki
    Akutsu, Tatsuya
    Asai, Kiyoshi
    BIOINFORMATICS, 2011, 27 (13) : I85 - I93
  • [44] RNA Secondary Structure Prediction Algorithms Including Pseudoknots
    Sharma, Dolly
    Singh, Shailendra
    Chand, Trilok
    CURRENT BIOINFORMATICS, 2014, 9 (03) : 268 - 283
  • [45] Enumerating RNA Structures, Including Pseudoknots of any Topology
    Ganjtabesh, Mohammad
    Steyaert, Jean-Marc
    MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY, 2011, 66 (01) : 399 - 414
  • [46] Prediction of RNA secondary structure with pseudoknots using integer programming
    Poolsap, Unyanee
    Kato, Yuki
    Akutsu, Tatsuya
    BMC BIOINFORMATICS, 2009, 10
  • [47] BiORSEO: a bi-objective method to predict RNA secondary structures with pseudoknots using RNA 3D modules
    Becquey, Louis
    Angel, Eric
    Tahi, Fariza
    BIOINFORMATICS, 2020, 36 (08) : 2451 - 2457
  • [48] A flexible stem-based local search algorithm for predicting RNA secondary structures including pseudoknots
    Chen, Xiang
    He, Si-Min
    Bu, Dong-Bo
    Chen, Run-Sheng
    Gao, Wen
    PROCEEDINGS OF THE 7TH IEEE INTERNATIONAL SYMPOSIUM ON BIOINFORMATICS AND BIOENGINEERING, VOLS I AND II, 2007, : 411 - +
  • [49] Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots
    Akutsu, T
    DISCRETE APPLIED MATHEMATICS, 2000, 104 (1-3) : 45 - 62
  • [50] Pseudoknots Prediction on RNA Secondary Structure Using Term Rewriting
    Chowdhury, Linkon
    Khan, Mohammad Ibrahim
    BIOINFORMATICS AND BIOMEDICAL ENGINEERING (IWBBIO 2015), PT I, 2015, 9043 : 577 - 588