Assembly Mechanisms of RNA Pseudoknots are Determined by the Stabilities of the Constituent Secondary Structures

被引:0
|
作者
Cho, Samuel S. [1 ]
Thirumalai, D. [1 ]
机构
[1] Univ Maryland, College Pk, MD 20742 USA
关键词
D O I
10.1016/j.bpj.2009.12.2573
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
引用
下载
收藏
页码:472A / 473A
页数:2
相关论文
共 50 条
  • [21] CompPknots: A framework for parallel prediction and comparison of RNA secondary structures with pseudoknots
    Estrada, Trilce
    Licon, Abel
    Taufer, Michela
    FRONTIERS OF HIGH PERFORMANCE COMPUTING AND NETWORKING - ISPA 2006 WORKSHOPS, PROCEEDINGS, 2006, 4331 : 677 - +
  • [22] GAknot: RNA secondary structures prediction with pseudoknots using Genetic Algorithm
    Tong, Kwok-Kit
    Cheung, Kwan-Yau
    Lee, Kin-Hong
    Leung, Kwong-Sak
    PROCEEDINGS OF THE 2013 IEEE SYMPOSIUM ON COMPUTATIONAL INTELLIGENCE IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (CIBCB), 2013, : 136 - 142
  • [23] An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots
    Ruan, JH
    Stormo, GD
    Zhang, WX
    BIOINFORMATICS, 2004, 20 (01) : 58 - 66
  • [24] McGenus: a Monte Carlo algorithm to predict RNA secondary structures with pseudoknots
    Bon, Michael
    Micheletti, Cristian
    Orland, Henri
    NUCLEIC ACIDS RESEARCH, 2013, 41 (03) : 1895 - 1900
  • [25] Combinatorics of RNA structures with pseudoknots
    Jin, Emma Y.
    Qin, Jing
    Reidys, Christian M.
    BULLETIN OF MATHEMATICAL BIOLOGY, 2008, 70 (01) : 45 - 67
  • [26] SARNA-Predict-pk: Predicting RNA Secondary Structures Including Pseudoknots
    Tsang, Herbert H.
    Wiese, Kay C.
    2008 IEEE SYMPOSIUM ON COMPUTATIONAL INTELLIGENCE IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2008, : 178 - 185
  • [27] Classifying Conserved RNA Secondary Structures With Pseudoknots by Vector-Edit Distance
    Huang, Liyu
    Chen, Qingfeng
    Li, Yongjie
    Luo, Cheng
    IEEE ACCESS, 2021, 9 : 32008 - 32018
  • [28] Visualization of RNA secondary structure with pseudoknots
    Yang, Lina
    Liu, Yang
    Luo, Huiwu
    Li, Xichun
    Tang, Yuan Yan
    INTERNATIONAL JOURNAL OF WAVELETS MULTIRESOLUTION AND INFORMATION PROCESSING, 2022, 20 (01)
  • [29] Predicting RNA secondary structures with arbitrary pseudoknots by maximizing the number of stacking pairs
    Ieong, S
    Kao, MY
    Lam, TW
    Sung, WK
    Yiu, SM
    2ND ANNUAL IEEE INTERNATIONAL SYMPOSIUM ON BIOINFORMATICS AND BIOENGINEERING, PROCEEDINGS, 2001, : 183 - 190
  • [30] FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space
    Chen, Xiang
    He, Si-Min
    Bu, Dongbo
    Zhang, Fa
    Wang, Zhiyong
    Chen, Runsheng
    Gao, Wen
    BIOINFORMATICS, 2008, 24 (18) : 1994 - 2001