InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

被引：169

作者：

Smith, Richard N. ^{[1
,2
]}

Aleksic, Jelena ^{[1
,2
]}

Butano, Daniela ^{[1
,2
]}

Carr, Adrian ^{[1
,2
]}

Contrino, Sergio ^{[1
,2
]}

Hu, Fengyuan ^{[1
,2
]}

Lyne, Mike ^{[1
,2
]}

Lyne, Rachel ^{[1
,2
]}

Kalderimis, Alex ^{[1
,2
]}

Rutherford, Kim ^{[1
,2
]}

Stepan, Radek ^{[1
,2
]}

Sullivan, Julie ^{[1
,2
]}

Wakeling, Matthew ^{[1
,2
]}

Watkins, Xavier ^{[1
,2
]}

Micklem, Gos ^{[1
,2
]}

机构：

[1] Univ Cambridge, Dept Genet, Cambridge CB2 3EH, England

[2] Univ Cambridge, Cambridge Syst Biol Ctr, Cambridge CB2 1QR, England

来源：

BIOINFORMATICS | 2012年 / 28卷 / 23期

基金：

英国惠康基金;

关键词：

D O I：

10.1093/bioinformatics/bts577

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

InterMine is an open-source data warehouse system that facilitates the building of databases with complex data integration requirements and a need for a fast customizable query facility. Using InterMine, large biological databases can be created from a range of heterogeneous data sources, and the extensible data model allows for easy integration of new data types. The analysis tools include a flexible query builder, genomic region search and a library of 'widgets' performing various statistical analyses. The results can be exported in many commonly used formats. InterMine is a fully extensible framework where developers can add new tools and functionality. Additionally, there is a comprehensive set of web services, for which client libraries are provided in five commonly used programming languages.

引用

页码：3163 / 3165

页数：3

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