InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

被引：169
|
作者：
Smith, Richard N. [1 ,2 ]
Aleksic, Jelena [1 ,2 ]
Butano, Daniela [1 ,2 ]
Carr, Adrian [1 ,2 ]
Contrino, Sergio [1 ,2 ]
Hu, Fengyuan [1 ,2 ]
Lyne, Mike [1 ,2 ]
Lyne, Rachel [1 ,2 ]
Kalderimis, Alex [1 ,2 ]
Rutherford, Kim [1 ,2 ]
Stepan, Radek [1 ,2 ]
Sullivan, Julie [1 ,2 ]
Wakeling, Matthew [1 ,2 ]
Watkins, Xavier [1 ,2 ]
Micklem, Gos [1 ,2 ]
机构：
[1] Univ Cambridge, Dept Genet, Cambridge CB2 3EH, England
[2] Univ Cambridge, Cambridge Syst Biol Ctr, Cambridge CB2 1QR, England
来源：
BIOINFORMATICS | 2012年 / 28卷 / 23期
基金：
英国惠康基金;
关键词：
D O I：
10.1093/bioinformatics/bts577
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
InterMine is an open-source data warehouse system that facilitates the building of databases with complex data integration requirements and a need for a fast customizable query facility. Using InterMine, large biological databases can be created from a range of heterogeneous data sources, and the extensible data model allows for easy integration of new data types. The analysis tools include a flexible query builder, genomic region search and a library of 'widgets' performing various statistical analyses. The results can be exported in many commonly used formats. InterMine is a fully extensible framework where developers can add new tools and functionality. Additionally, there is a comprehensive set of web services, for which client libraries are provided in five commonly used programming languages.
引用
收藏
页码：3163 / 3165
页数：3
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