InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

被引：169
|
作者：
Smith, Richard N. [1 ,2 ]
Aleksic, Jelena [1 ,2 ]
Butano, Daniela [1 ,2 ]
Carr, Adrian [1 ,2 ]
Contrino, Sergio [1 ,2 ]
Hu, Fengyuan [1 ,2 ]
Lyne, Mike [1 ,2 ]
Lyne, Rachel [1 ,2 ]
Kalderimis, Alex [1 ,2 ]
Rutherford, Kim [1 ,2 ]
Stepan, Radek [1 ,2 ]
Sullivan, Julie [1 ,2 ]
Wakeling, Matthew [1 ,2 ]
Watkins, Xavier [1 ,2 ]
Micklem, Gos [1 ,2 ]
机构：
[1] Univ Cambridge, Dept Genet, Cambridge CB2 3EH, England
[2] Univ Cambridge, Cambridge Syst Biol Ctr, Cambridge CB2 1QR, England
来源：
BIOINFORMATICS | 2012年 / 28卷 / 23期
基金：
英国惠康基金;
关键词：
D O I：
10.1093/bioinformatics/bts577
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
InterMine is an open-source data warehouse system that facilitates the building of databases with complex data integration requirements and a need for a fast customizable query facility. Using InterMine, large biological databases can be created from a range of heterogeneous data sources, and the extensible data model allows for easy integration of new data types. The analysis tools include a flexible query builder, genomic region search and a library of 'widgets' performing various statistical analyses. The results can be exported in many commonly used formats. InterMine is a fully extensible framework where developers can add new tools and functionality. Additionally, there is a comprehensive set of web services, for which client libraries are provided in five commonly used programming languages.
引用
收藏
页码：3163 / 3165
页数：3
相关论文
共 50 条
  • [1] Automated integration of heterogeneous data warehouse schemas
    University of Zagreb, Faculty of Electrical Engineering and Computing, Zagreb, Croatia
    不详
    Int. J. Data Warehouse. Min., 2008, 4 (1-21):
  • [2] Integration Materials Data between Heterogeneous Databases Based on Data Warehouse Technologies
    Yu, Gang
    Chen, Jingzhong
    2009 THIRD INTERNATIONAL SYMPOSIUM ON INTELLIGENT INFORMATION TECHNOLOGY APPLICATION, VOL 2, PROCEEDINGS, 2009, : 233 - 236
  • [3] Data Warehouse Oriented Data Integration System Design and Implementation
    Wang, Xiaoguo
    Shen, Jian
    Sun, Chuan
    MECHATRONICS AND INDUSTRIAL INFORMATICS, PTS 1-4, 2013, 321-324 : 2532 - 2538
  • [4] Cost Effective Framework for Complex and Heterogeneous Data Integration in Warehouse
    Amuthabala, P.
    Mohanapriya, M.
    SOFTWARE ENGINEERING PERSPECTIVES AND APPLICATION IN INTELLIGENT SYSTEMS, VOL 2, 2016, 465 : 93 - 104
  • [5] Data extraction and integration for data warehouse
    Xu, Li-Zhen
    Xie, Hong-Qiang
    Dong, Yi-Sheng
    2003, Shenyang Institute of Computing Technology (24):
  • [6] Channeling the water data deluge: a system for flexible integration and analysis of hydrologic data
    McGuire, Michael P.
    Roberge, Martin C.
    Lian, Jie
    INTERNATIONAL JOURNAL OF DIGITAL EARTH, 2016, 9 (03) : 272 - 299
  • [7] Research on Heterogeneous Data Integration Model for Warehouse Logistics Based on XML
    Deng, Hongxia
    Wang, Zheng
    Chang, Xiaoming
    2010 THE 3RD INTERNATIONAL CONFERENCE ON COMPUTATIONAL INTELLIGENCE AND INDUSTRIAL APPLICATION (PACIIA2010), VOL IX, 2010, : 408 - 411
  • [8] Research on Heterogeneous Data Integration Model for Warehouse Logistics Based on XML
    Deng, Hongxia
    Wang, Zheng
    Chang, Xiaoming
    2011 INTERNATIONAL CONFERENCE ON INTELLIGENT COMPUTATION AND INDUSTRIAL APPLICATION (ICIA2011), VOL IV, 2011, : 407 - 410
  • [9] The researches on the data storage of heterogeneous data integration system
    Zhang, J
    Li, GY
    Huang, H
    Xie, YW
    Cao, ZY
    PROCEEDINGS OF 2003 INTERNATIONAL CONFERENCE ON MANAGEMENT SCIENCE & ENGINEERING, VOLS I AND II, 2003, : 29 - 34
  • [10] XML-Based Heterogeneous Database Integration For Data Warehouse Creation
    Tseng, Frank S. C.
    PACIFIC ASIA CONFERENCE ON INFORMATION SYSTEMS 2005, SECTIONS 1-8 AND POSTER SESSIONS 1-6, 2005, : 590 - 603
12345