Mumia quercus sp. nov., isolated from the root of Quercus variabilis

被引:1
|
作者
Chen, Hongmin [1 ]
Cao, Tingting [2 ]
Wang, Teng [1 ]
Gao, Congting [1 ]
Yang, Jingquan
Dong, Qingyan [1 ]
Shen, Yue [1 ,2 ]
Liu, Chongxi [1 ]
机构
[1] Northeast Agr Univ, Key Lab Agr Microbiol Heilongjiang Prov, Harbin 150030, Peoples R China
[2] Zhejiang A&F Univ, State Key Lab Subtrop Silviculture, Hangzhou 311300, Peoples R China
关键词
Mumia quercus sp; nov; polyphasic taxonomy; Quercus variabilis; SEQUENCES; DNA;
D O I
10.1099/ijsem.0.005776
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A novel endophytic actinomycete, designated strain NEAU- 365T, was isolated from the root of Quercus variabilis collected from Nanjing, Jiangsu, PR China. Comparative 16S rRNA gene sequencing showed that strain NEAU- 365T belonged to the genus Mumia but clearly differs from the currently recognized species Mumia zhuanghuii Z350T (99.31 %), Mumia xiangluensis NEAU-KD1T (98.82 %) and Mumia flava MUSC 201T (97.78 %). Phylogenetic tree analysis revealed that strain NEAU- 365T clustered with the type strains of the genus Mumia. The genome size was 4.1 Mbp with a DNA G+C content of 71.2 mol%. Digital DNA-DNA hybridization and average nucleotide identity values between the genome sequence of strain NEAU- 365T and those of M. zhuan-ghuii Z350T(27.5 and 84.0 %), M. xiangluensis NEAU-KD1T(23.4 and 80.9 %) and M. flava MUSC 201T(20.9 and 77.7 %) were below the recommended thresholds for species delineation. Cells were observed to be irregular cocci shaped. The cell wall contained iota iota-diaminopimelic acid and the whole -cell sugars were galactose and rhamnose. The polar lipids consisted of diphosphati-dylglycerol, phosphatidylglycerol, phosphoglycolipid and three unidentified phospholipids. The predominant menaquinone was detected as MK-9(H4). The major fatty acids were C16:0, C18:0, C18: 1 omega 9c and 10-methyl C18:0. On the basis of genotypic and pheno-typic differences from members of the genus Mumia, a novel species, Mumia quercus sp. nov. is proposed. The type strain is NEAU-365T (=CCTCC AA 2021033T=JCM 35005T).
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页数:5
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