Microbacterium aquilitoris sp. nov. and Microbacterium gwkjiense sp. nov., isolated from beach

被引:2
|
作者
Lee, Soon Dong [1 ]
Yang, Hong Lim [1 ]
Kim, Ji-Sun [2 ]
Kim, In Seop [3 ,4 ]
机构
[1] BioPS Co Ltd, Inst Jeju Microbial Resources, Jeju 63243, South Korea
[2] Korea Res Inst Biosci & Biotechnol, Biol Resource Ctr, Korean Collect Type Cultures, Jeongeup 56212, South Korea
[3] Hannam Univ, Dept Biol Sci & Biotechnol, Daejeon 34054, South Korea
[4] BioPS Co Ltd, Daejeon 34054, South Korea
关键词
Two Microbacterium species; Seawater; Seaweed; Genome analysis; QUALITY; SEA;
D O I
10.1007/s00203-023-03804-5
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Three Gram-reaction-positive bacterial strains, designated KSW-18(T), KSW2-22, and KSW4-11(T), were isolated from seawater, and two dried seaweed samples collected at Gwakji Beach in Jeju, Republic of Korea, respectively, and their taxonomic positions were examined by a polyphasic approach. The 16S rRNA gene phylogeny showed that strain KSW4-11(T) was tightly associated with Microbacterium oleivorans NBRC 103075(T), while strains KSW-18(T) and KSW2-22 formed a distinctive subline at the base of a clade including the above two strains. The three isolates showed high sequence similarity with one another (99.7-99.9%; 1-4 nt differences) and Microbacterium oleivorans (99.8-99.9%; 1-3 nt differences). The chemotaxonomic features were typical for the genus Microbacterium; Lysine as the diagnostic diamino acid and N-glycolylated muramic acid of the peptidoglycans, the predominant menaquinones of MK-11, MK-10 and MK-12, the major fatty acids of anteiso-C-15:0 and anteiso-C-17:0, and the major polar lipids including diphosphatidylglycerol, phosphatidylglycerol, and two or three unidentified glycolipids. In core genome-based phylogenetic tree, strains KSW-18(T) and KSW2-22 were closely associated with Microbacterium oleivorans NBRC 103075(T), while strain KSW4-11(T) formed a distinctive subline at the base of a clade including the above three strains, in contrast to the 16S rRNA gene tree. Strains KSW-18(T) and KSW2-22 shared an OrthoANIu of 98.6% and a digital DNA-DNA hybridization of 87.6% with each other, representing that they were strains of a species, while the OrthoANIu and digital DNA-DNA hybridization values between strains KSW-18(T) and KSW4-11(T), and between both of these isolates and all members of the genus Microbacterium were <= 86.5% and <= 30.7%, respectively. The analyses of overall genomic relatedness indices and phenotypic distinctness support that the three isolates represent two new species of the genus Microbacterium. Based on the results obtained here, Microbacterium aquilitoris sp. nov. (type strain KSW-18(T) = KCTC 49623(T) = NBRC 115222(T)) and Microbacterium gwkjiense sp. nov. (type strain KSW4-11(T) = KACC 23321(T) = DSM 116380(T)) are proposed.
引用
收藏
页数:9
相关论文
共 50 条
  • [1] Microbacterium aquilitoris sp. nov. and Microbacterium gwkjiense sp. nov., isolated from beach
    Soon Dong Lee
    Hong Lim Yang
    Ji-Sun Kim
    In Seop Kim
    Archives of Microbiology, 2024, 206
  • [2] Correction to: Microbacterium aquilitoris sp. nov. and Microbacterium gawkjiense sp. nov., isolated from beach
    Soon Dong Lee
    Hong Lim Yan
    Ji-Sun Kim
    In Seop Kim
    Archives of Microbiology, 2024, 206
  • [3] Microbacterium aquilitoris sp. nov. and Microbacterium gawkjiense sp. nov., isolated from beach (vol 206, 100, 2024)
    Lee, Soon Dong
    Yan, Hong Lim
    Kim, Ji-Sun
    Kim, In Seop
    ARCHIVES OF MICROBIOLOGY, 2024, 206 (05)
  • [4] Microbacterium algihabitans sp. nov., Microbacterium phycohabitans sp. nov., and Microbacterium galbum sp. nov., isolated from dried beach seaweeds
    Lee, Soon Dong
    Yang, Hong Lim
    Kim, In Seop
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2024, 74 (07)
  • [5] Microbacterium candidum sp. nov. and Microbacterium capsulatum sp. nov., isolated from waste landfill
    Wen, Wen
    Zhao, Yuanyuan
    Xie, Bing
    Lv, Jie
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2025, 75 (03)
  • [6] Microbacterium humicola sp. nov., Microbacterium terrisoli sp. nov., Paenibacillus pedocola sp. nov., Paenibacillus silviterrae sp. nov., Flavobacterium terrisoli sp. nov., and Aquabacterium humicola sp. nov., isolated from soil
    Lee, Hyosun
    Chaudhary, Dhiraj Kumar
    Lee, Ki-Eun
    Cha, In-Tae
    Chi, Won-Jae
    Kim, Dong- Uk
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2024, 74 (08)
  • [7] Three new Microbacterium species isolated from the Marmara Sea mucilage event: Microbacterium istanbulense sp. nov., Microbacterium bandirmense sp. nov., Microbacterium marmarense sp. nov
    Saticioglu, Izzet Burcin
    Ajmi, Nihed
    Coskuner-Weber, Orkid
    Alpsoy, Semih
    Ay, Hilal
    Aydin, Fuat
    Abay, Secil
    Karakaya, Emre
    Kayman, Tuba
    Dalyan, Cem
    Koca, Fatih Dogan
    Tasci, Gorkem
    Yarim, Dogancan
    Morick, Danny
    Yibar, Artun
    Erdogan, Serdar
    Altun, Soner
    Duman, Muhammed
    SYSTEMATIC AND APPLIED MICROBIOLOGY, 2025, 48 (03)
  • [8] Microbacterium chengjingii sp. nov. and Microbacterium fandaimingii sp. nov., isolated from bat faeces of Hipposideros and Rousettus species
    Zhou, Juan
    Huang, Yuyuan
    Yang, Jing
    Lai, Xin-He
    Jin, Dong
    Lu, Shan
    Pu, Ji
    Zhang, Sihui
    Zhu, Wentao
    Xu, Mingchao
    Huang, Ying
    Liang, Junrong
    Zheng, Han
    Xu, Jianguo
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2021, 71 (07)
  • [9] Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria
    Fuquan Xie
    Siwen Niu
    Xihuang Lin
    Shengxiang Pei
    Li Jiang
    Yun Tian
    Gaiyun Zhang
    Journal of Microbiology, 2021, 59 : 886 - 897
  • [10] Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria
    Xie, Fuquan
    Niu, Siwen
    Lin, Xihuang
    Pei, Shengxiang
    Jiang, Li
    Tian, Yun
    Zhang, Gaiyun
    JOURNAL OF MICROBIOLOGY, 2021, 59 (10) : 886 - 897