In silico identification of potential phytochemical inhibitors for mpox virus: molecular docking, MD simulation, and ADMET studies

被引:2
|
作者
Ghate, Sudeep D. [1 ,2 ]
Pinto, Larina [1 ]
Alva, Shivakiran [1 ]
Srinivasa, Mahendra Gowdru [3 ]
Vangala, Rajani Kanth [4 ]
Naik, Prashantha [5 ]
Revanasiddappa, B. C. [3 ]
Rao, R. Shyama Prasad [1 ,2 ]
机构
[1] NITTE Deemed Univ, Ctr Bioinformat, Mangaluru 575018, India
[2] NITTE Deemed Univ, KS Hegde Med Acad, Cent Res Lab, Mangaluru 575018, India
[3] Nitte Deemed Univ, NGSM Inst Pharmaceut Sci NGSMIPS, Dept Pharmaceut Chem, Mangaluru 575018, India
[4] Neuome Technol Pvt Ltd, Bangalore Bioinnovat Ctr, Inst Appl Res & Innovat, IBAB Campus,Elect City Phase 1, Bangalore 560100, India
[5] Mangalore Univ, Dept Biosci, Mangaluru 574199, India
关键词
Antivirals; Computational drug discovery; Mpox virus; Molecular dynamics; Phytochemicals; VACCINIA VIRUS; ENVELOPE FORMATION; DNA-LIGASE; GENE; DYNAMICS;
D O I
10.1007/s11030-023-10797-2
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The mpox virus (MPXV), a member of the Poxviridae family, which recently appeared outside of the African continent has emerged as a global threat to public health. Given the scarcity of antiviral treatments for mpox disease, there is a pressing need to identify and develop new therapeutics. We investigated 5715 phytochemicals from 266 species available in IMMPAT database as potential inhibitors for six MPXV targets namely thymidylate kinase (A48R), DNA ligase (A50R), rifampicin resistance protein (D13L), palmytilated EEV membrane protein (F13L), viral core cysteine proteinase (I7L), and DNA polymerase (E9L) using molecular docking. The best-performing phytochemicals were also subjected to molecular dynamics (MD) simulations and in silico ADMET analysis. The top phytochemicals were forsythiaside for A48R, ruberythric acid for A50R, theasinensin F for D13L, theasinensin A for F13L, isocinchophyllamine for I7L, and terchebin for E9L. Interestingly, the binding energies of these potential phytochemical inhibitors were far lower than brincidofovir and tecovirimat, the standard drugs used against MPXV, hinting at better binding properties of the former. These findings may pave the way for developing new MPXV inhibitors based on natural product scaffolds. However, they must be further studied to establish their inhibitory efficacy and toxicity in in vitro and in vivo models.
引用
收藏
页码:4067 / 4086
页数:20
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