Phytochemical Analysis, In Vitro Biological Activities, and Computer-Aided Analysis of Potentilla nepalensis Hook Compounds as Potential Melanoma Inhibitors Based on Molecular Docking, MD Simulations, and ADMET

被引:6
|
作者
Sharma, Subhash [1 ]
Kumar, Vikas [2 ]
Yaseen, Muhammad [3 ]
S. Abouzied, Amr [4 ]
Arshad, Abgeena [5 ]
Bhat, Mashooq Ahmad [6 ]
Naglah, Ahmed M. M. [6 ]
Patel, Chirag N. N. [7 ,8 ]
Sivakumar, Prasanth Kumar [7 ]
Sourirajan, Anuradha [1 ]
Shahzad, Adnan [3 ]
Dev, Kamal [1 ,9 ]
机构
[1] Shoolini Univ, Fac Appl Sci & Biotechnol, POB 9, Solan 173212, India
[2] Chandigarh Univ, Univ Inst Biotechnol, Dept Biotechnol, Gharuan 140413, Mohali, India
[3] Univ Swat, Inst Chem Sci, Charbagh 19130, Swat, Pakistan
[4] Natl Org Drug Control & Res NODCAR, Dept Pharmaceut Chem, Giza 12311, Egypt
[5] Asian Med Inst, Kant 725013, Kyrgyzstan
[6] King Saud Univ, Coll Pharm, Dept Pharmaceut Chem, Riyadh 11451, Saudi Arabia
[7] Gujarat Univ, Univ Sch Sci, Dept Bot Bioinformat & Climate Change Impacts Mana, Ahmadabad 380009, India
[8] Technol Innovat Inst, Biotechnol Res Ctr, Abu Dhabi 9639, U Arab Emirates
[9] Wright State Univ, Dept Pharmacol & Toxicol, Dayton, OH 45435 USA
来源
MOLECULES | 2023年 / 28卷 / 13期
关键词
Potentilla nepalensis; biological activities; antioxidant activity; anticancer activity; GC-MS analysis; molecular docking; MD simulations; toxicity prediction; TOTAL PHENOLS; FORCE-FIELD; ANTIOXIDANT; EXTRACT; ACID;
D O I
10.3390/molecules28135108
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Potentilla nepalensis Hook is a perennial Himalayan medicinal herb of the Rosaceae family. The present study aimed to evaluate biological activities such as the antioxidant, antibacterial, and anticancer activities of roots and shoots of P. nepalensis and its synergistic antibacterial activity with antibacterial drugs. Folin-Ciocalteau and aluminium chloride methods were used for the calculation of total phenolic (TPC) and flavonoid content (TFC). A DPPH radical scavenging assay and broth dilution method were used for the determination of the antioxidant and antibacterial activity of the root and shoot extracts of P. nepalensis. Cytotoxic activity was determined using a colorimetric MTT assay. Further, phytochemical characterization of the root and shoot extracts was performed using the Gas chromatography-mass spectrophotometry (GC-MS) method. The TPC and TFC were found to be higher in the methanolic root extract of P. nepalensis. The methanolic shoot extract of P. nepalensis showed good antioxidant activity, while then-hexane root extract of P. nepalensis showed strong cytotoxic activity against tested SK-MEL-28 cells. Subsequently, in silico molecular docking studies of the identified bioactive compounds predicted potential anticancer properties. This study can lead to the production of new herbal medicines for various diseases employing P. nepalensis, leading to the creation of new medications.
引用
收藏
页数:20
相关论文
共 37 条
  • [1] Computer-aided analysis of phytochemicals as potential dengue virus inhibitors based on molecular docking, ADMET and DFT studies
    Qaddir, Iqra
    Rasool, Nouman
    Hussain, Waqar
    Mahmood, Sajid
    JOURNAL OF VECTOR BORNE DISEASES, 2017, 54 (03) : 255 - 262
  • [2] mPGES-1 Inhibitor Discovery Based on Computer-Aided Screening: Pharmacophore Models, Molecular Docking, ADMET, and MD Simulations
    Huang, Qiqi
    Lai, Tianli
    Wang, Qu
    Luo, Lianxiang
    MOLECULES, 2023, 28 (16):
  • [3] Identification of potential human pancreatic α-amylase inhibitors from natural products by molecular docking, MM/GBSA calculations, MD simulations, and ADMET analysis
    Basnet, Santosh
    Ghimire, Madhav Prasad
    Lamichhane, Tika Ram
    Adhikari, Rajendra
    Adhikari, Achyut
    PLOS ONE, 2023, 18 (03):
  • [4] Computer-aided analysis for identification of novel analogues of ketoprofen based on molecular docking, ADMET, drug-likeness and DFT studies for the treatment of inflammation
    Bettadj, Fatima Zohra Yasmine
    Benchouk, Wafaa
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2023, 41 (19): : 9915 - 9930
  • [5] Computer-aided discovery of novel SmDHODH inhibitors for schistosomiasis therapy: Ligand-based drug design, molecular docking, molecular dynamic simulations, drug-likeness, and ADMET studies
    Ja'afaru, Saudatu Chinade
    Uzairu, Adamu
    Hossain, Sharika
    Ullah, Mohammad Hamid
    Sallau, Muhammed Sani
    Ndukwe, George Iloegbulam
    Ibrahim, Muhammad Tukur
    Bayil, Imren
    Moin, Abu Tayab
    PLOS NEGLECTED TROPICAL DISEASES, 2024, 18 (09):
  • [6] Computer-aided identification of lead compounds as Staphylococcal epidermidis FtsZ inhibitors using molecular docking, virtual screening, DFT analysis, and molecular dynamic simulation
    Tripathy, Swayansiddha
    Sahu, Susanta Kumar
    Azam, Mohammed Afzal
    Jupudi, Srikanth
    JOURNAL OF MOLECULAR MODELING, 2019, 25 (12)
  • [7] Computer-aided identification of lead compounds as Staphylococcal epidermidis FtsZ inhibitors using molecular docking, virtual screening, DFT analysis, and molecular dynamic simulation
    Swayansiddha Tripathy
    Susanta Kumar Sahu
    Mohammed Afzal Azam
    Srikanth Jupudi
    Journal of Molecular Modeling, 2019, 25
  • [8] Molecular Docking, ADMET Analysis and Molecular Dynamics (MD) Simulation to Identify Synthetic Isoquinolines as Potential Inhibitors of SARS-CoV-2 MPRO
    Correia, Paulo Ricardo dos Santos
    de Souza, Alesson Henrique Donato
    Chaparro, Andres Reyes
    Tenorio Barajas, Aldo Yair
    Porto, Ricardo Silva
    CURRENT COMPUTER-AIDED DRUG DESIGN, 2023, 19 (05) : 391 - 404
  • [9] Exploring the medicinal potential of Senna siamea roots: an integrated study of antibacterial and antioxidant activities, phytochemical analysis, ADMET profiling, and molecular docking insights
    Gebrehiwot, Hadush
    Ensermu, Urgessa
    Dekebo, Aman
    Endale, Milkyas
    Hunsen, Mo
    APPLIED BIOLOGICAL CHEMISTRY, 2024, 67 (01)
  • [10] A computer-aided drug design approach to explore novel type II inhibitors of c-Met receptor tyrosine kinase for cancer therapy: QSAR, molecular docking, ADMET and molecular dynamics simulations
    Daoui, Ossama
    Nour, Hassan
    Abchir, Oussama
    Elkhattabi, Souad
    Bakhouch, Mohamed
    Chtita, Samir
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2023, 41 (16): : 7768 - 7785