Complete chloroplast genome and phylogenetic analysis of Meliosma oldhamii Miq. ex Maxim. (Sabiaceae)

被引:0
|
作者
Cheng, Yao [1 ,2 ]
Xu, Xiaogang [1 ,2 ]
Tong, Lili [1 ,3 ]
Tian, Lu [1 ,2 ]
Xia, Chongli [3 ]
Yu, Xunlin [4 ]
机构
[1] Nanjing Forestry Univ, Coll Biol & Environm, Key Lab State Forestry & Grassland Adm Subtrop For, Coinnovat Ctr Sustainable Forestry Southern China, Nanjing, Peoples R China
[2] State Environm Protect Sci Observat & Res Stn Ecol, Nanping, Peoples R China
[3] Jinling Inst Technol, Sch Hort & Landscape Architecture, Nanjing, Peoples R China
[4] Cent South Univ Forestry & Technol, Coll Forestry, Changsha, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2023年 / 8卷 / 11期
关键词
Meliosma oldhamii; complete chloroplast genome; phylogenetic analysis; Sabiaceae;
D O I
10.1080/23802359.2023.2281034
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Meliosma oldhamii Miq. is a deciduous arbor and a member of Sabiaceae. It is one of the rare and protected plants with outstanding ornamental and economic value in Jiangsu, China. In addition to the resource values indicated above, there are numerous other elements that require additional research, including the chloroplast (cp) genomic information. In this work, the complete cp genome sequence of M. oldhamii was assembled and characterized for the first time. The complete cp genome of M. oldhamii was 159,950 base pair (bp) in length, including a large single-copy (LSC) region of 87,147 bp, a small single-copy (SSC) region of 18,015 bp, and the inverted repeats (IRs) region of 27,394 bp. It contains 131 genes, including 37 tRNA genes, eight rRNA genes, 85 protein-coding genes, and one pseudogene. The overall GC content of M. oldhamii cp genome was 37.95%. The placement of M. oldhamii in the phylogenetic tree constructed using the complete cp genome is largely congruent with previous studies. The clustering of Meliosma is non-monophyletic, aligns more closely with existing morphological taxonomic studies, thereby enhancing the scholarly and scientific nature of this research.
引用
收藏
页码:1306 / 1310
页数:5
相关论文
共 50 条
  • [41] The complete chloroplast genome sequence of Ligularia stenocephala (Maxim.) Matsum. & Koidz. (Asteraceae: Senecioneae)
    Park, Min-Su
    Cho, Won-Bum
    Jang, Hyun-Do
    Jang, Chang-gee
    MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (02): : 336 - 338
  • [42] The complete chloroplast genome of Geum longifolium (Maxim.) Smedmark 2006 (Rosaceae: Colurieae) and its phylogenomic implications
    Guo, Jia-Jie
    Zhang, Zhi-Ping
    Khasbagan
    Soyolt
    Li, Qin-Qin
    MITOCHONDRIAL DNA PART B-RESOURCES, 2023, 8 (10): : 1124 - 1127
  • [43] Efficacy and mechanism study of Baichanting compound, a combination of Acanthopanax senticosus (Rupr. and Maxim.) Harms, Paeonia lactiflora Pall and Uncaria rhynchophylla (Miq.) Miq. ex Havil, on Parkinson's disease based on metagenomics and metabolomics
    Lu, Yi
    Gao, Xin
    Mohammed, Shadi A. D.
    Wang, Tianyu
    Fu, Jiaqi
    Wang, Yu
    Nan, Yang
    Lu, Fang
    Liu, Shumin
    JOURNAL OF ETHNOPHARMACOLOGY, 2024, 319
  • [44] Complete chloroplast genome sequence and phylogenetic analysis of Ilex viridis Champ. ex Benth
    Shan, Zhenyu
    Zhou, Biyao
    Li, Yao
    Liu, Daosen
    Li, Wei
    Ma, Julin
    Su, Tao
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 914 - 915
  • [45] Complete chloroplast genome and phylogenetic analysis of Anemone shikokiana
    An, Kang
    Zhou, Chunxia
    Feng, Lei
    Zhang, Qing
    Pang, Yujuan
    Li, Lixia
    Bian, Fuhua
    MOLECULAR BIOLOGY REPORTS, 2023, 50 (03) : 2095 - 2105
  • [46] Complete chloroplast genome of Acer tegmentosum and phylogenetic analysis
    Kim, Sang-Chul
    Shin, Sookyung
    Lee, Min-Woo
    Lee, Jei-Wan
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2555 - 2556
  • [47] The complete chloroplast genome of Swertia tetraptera and phylogenetic analysis
    Yang, Lucun
    Xiong, Feng
    Xiao, Yuanming
    Li, Jingjing
    Chen, Cheng
    Zhou, Guoying
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 164 - 165
  • [48] The complete chloroplast genome and phylogenetic analysis of Cuminum cyminum
    Zhou, Jing
    Liu, Zhenwen
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 1079 - 1080
  • [49] Phylogenetic analysis of the complete chloroplast genome of Gracilaria vermiculophylla
    Li, Yan
    Han, Hongbin
    Ma, Xiaojun
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 2141 - 2142
  • [50] Complete chloroplast genome of Corylopsis spicata and phylogenetic analysis
    Kim, Sang-Chul
    Shin, Sookyung
    Ahn, Ji-Young
    Lee, Jei-Wan
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2700 - 2701