Identification of key genes and pathways in adrenocortical carcinoma: evidence from bioinformatic analysis

被引:1
|
作者
Yin, Mengsha [1 ]
Wang, Yao [2 ]
Ren, Xinhua [1 ]
Han, Mingyue [1 ]
Li, Shanshan [1 ]
Liang, Ruishuang [1 ]
Wang, Guixia [1 ]
Gang, Xiaokun [1 ]
机构
[1] First Hosp Jilin Univ, Dept Endocrinol & Metab, Changchun, Peoples R China
[2] Second Hosp Jilin Univ, Dept Orthoped, Changchun, Peoples R China
来源
基金
中国国家自然科学基金;
关键词
adrenocortical carcinoma; gene expression omnibus; differentially expressed genes; protein-protein interaction; Kaplan-Meier curve; ADJUVANT RADIOTHERAPY; THERAPEUTIC TARGET; EXPRESSION; EFFICACY; P53; INHIBITOR; PROGNOSIS; ALISERTIB; MUTATION; CANCER;
D O I
10.3389/fendo.2023.1250033
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Adrenocortical carcinoma (ACC) is a rare endocrine malignancy with poor prognosis. The disease originates from the cortex of adrenal gland and lacks effective treatment. Efforts have been made to elucidate the pathogenesis of ACC, but the molecular mechanisms remain elusive. To identify key genes and pathways in ACC, the expression profiles of GSE12368, GSE90713 and GSE143383 were downloaded from the Gene Expression Omnibus (GEO) database. After screening differentially expressed genes (DEGs) in each microarray dataset on the basis of cut-off, we identified 206 DEGs, consisting of 72 up-regulated and 134 down-regulated genes in three datasets. Function enrichment analyses of DEGs were performed by DAVID online database and the results revealed that the DEGs were mainly enriched in cell cycle, cell cycle process, mitotic cell cycle, response to oxygen-containing compound, progesterone-mediated oocyte maturation, p53 signaling pathway. The STRING database was used to construct the protein-protein interaction (PPI) network, and modules analysis was performed using Cytoscape. Finally, we filtered out eight hub genes, including CDK1, CCNA2, CCNB1, TOP2A, MAD2L1, BIRC5, BUB1 and AURKA. Biological process analysis showed that these hub genes were significantly enriched in nuclear division, mitosis, M phase of mitotic cell cycle and cell cycle process. Violin plot, Kaplan-Meier curve and stage plot of these hub genes confirmed the reliability of the results. In conclusion, the results in this study provided reliable key genes and pathways for ACC, which will be useful for ACC mechanisms, diagnosis and candidate targeted treatment.
引用
收藏
页数:12
相关论文
共 50 条
  • [41] Bioinformatic identification of key pathways, hub genes, and microbiota for therapeutic intervention inHelicobacter pyloriinfection
    Chen, Zhenhui
    Chen, Huijuan
    Yu, Lu
    Xin, Hongjie
    Kong, Jingjing
    Bai, Yang
    Zeng, Weisen
    Zhang, Jumei
    Wu, Qingping
    Fan, Hongying
    JOURNAL OF CELLULAR PHYSIOLOGY, 2021, 236 (02) : 1158 - 1183
  • [42] Identification of Key Genes and Pathways in Oxaliplatin-Induced Neuropathic Pain Through Bioinformatic
    Lou, Yaling
    Xu, Xuting
    Wang, Ronghua
    Yao, Danfeng
    JOURNAL OF PAIN RESEARCH, 2024, 17 : 1639 - 1650
  • [43] Screening and identification of key genes between liver hepatocellular carcinoma (LIHC) and cholangiocarcinoma (CHOL) by bioinformatic analysis
    Kang, Xindan
    Bai, Li
    QI, Xiaoguang
    Wang, Jing
    MEDICINE, 2020, 99 (50) : E23563
  • [44] Screening and identification of key genes and pathways in metastatic uveal melanoma based on gene expression using bioinformatic analysis
    Xie, Jialu
    Wu, Zhenyu
    Xu, Xiaogang
    Liang, Guanlu
    Xu, Jiehui
    MEDICINE, 2020, 99 (43) : E22974
  • [45] Identification of key genes and pathways associated with neuropathic pain in uninjured dorsal root ganglion by using bioinformatic analysis
    Chen, Chao-Jin
    Liu, De-Zhao
    Yao, Wei-Feng
    Gu, Yu
    Huang, Fei
    Hei, Zi-Qing
    Li, Xiang
    JOURNAL OF PAIN RESEARCH, 2017, 10 : 2665 - 2674
  • [46] Identification of endometriosis-associated genes and pathways based on bioinformatic analysis
    Wang, Ting
    Jiang, Ruoan
    Yao, Yingsha
    Qian, Linhua
    Zhao, Yu
    Huang, Xiufeng
    MEDICINE, 2021, 100 (27)
  • [47] Key regulatory genes and signaling pathways involved in islet culture: a bioinformatic analysis
    Shi, Jing
    Zhang, Yong-Qun
    Hao, Dou-Dou
    Fu, Su-Hong
    Meng, Jin-Li
    INTERNATIONAL JOURNAL OF CLINICAL AND EXPERIMENTAL PATHOLOGY, 2021, 14 (02): : 292 - 303
  • [48] Bioinformatic analysis of key pathways and genes shared between endometriosis and ovarian cancer
    Leyi Ni
    Yumei Chen
    Jie Yang
    Cong Chen
    Archives of Gynecology and Obstetrics, 2022, 305 : 1329 - 1342
  • [49] Screening and Identification of Key Biomarkers in Metastatic Uveal Melanoma: Evidence from a Bioinformatic Analysis
    Wang, Tan
    Wang, Zixing
    Yang, Jingyuan
    Chen, Youxin
    Min, Hanyi
    JOURNAL OF CLINICAL MEDICINE, 2022, 11 (23)
  • [50] Bioinformatic analysis of key pathways and genes shared between endometriosis and ovarian cancer
    Ni, Leyi
    Chen, Yumei
    Yang, Jie
    Chen, Cong
    ARCHIVES OF GYNECOLOGY AND OBSTETRICS, 2022, 305 (05) : 1329 - 1342