Multi-Omics and Genome Editing Studies on Plant Cell Walls to Improve Biomass Quality

被引:2
|
作者
Sirangelo, Tiziana Maria [1 ]
Ludlow, Richard Andrew [2 ]
Chenet, Tatiana [3 ]
Pasti, Luisa [3 ]
Spadafora, Natasha Damiana [4 ]
机构
[1] Council Agr Res & Agr Econ Anal, Genom & Bioinformat Dept, CREA, I-26836 Montanaso Lombardo, Italy
[2] Cardiff Univ, Sch Biosci, Sir Martin Evans Bldg,Museum Ave, Cardiff CF10 3AX, Wales
[3] Univ Ferrara, Dept Environm & Prevent Sci, I-44121 Ferrara, Italy
[4] Univ Ferrara, Dept Chem Pharmaceut & Agr Sci, I-44121 Ferrara, Italy
来源
AGRICULTURE-BASEL | 2023年 / 13卷 / 04期
关键词
energy crops; genome editing; genomics; metabolomics; phenomics; proteomics; transcriptomics; WIDE ASSOCIATION; GENE FAMILY; POPULUS; REVEALS; CRISPR/CAS9; POPULATIONS; BIOLOGY; BARLEY; YIELD; QTL;
D O I
10.3390/agriculture13040752
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Biomass is one of the most important sources of renewable energy and plays an important role in reducing our reliance on fossil fuels. Efficient biomass production is essential to obtain large amounts of sustainable energy with minimal environmental cost. However, the biochemical and molecular processes behind the synthesis of the main components of biomass are still not fully understood. This review provides a comprehensive summary of the most relevant studies on cell wall biosynthesis and degradation mechanisms, focusing on the lignocellulosic component, in which the conversion process to fermentable sugars is expensive, due to its recalcitrant nature. A focus is placed on multi-omics research involving genomics, transcriptomics, proteomics, metabolomics, and phenomics, since multi-omics approaches offer a unique opportunity to investigate the biological pathways underlying the genotype traits characterizing cell wall energy crops. Furthermore, our study highlights the advances in genome editing approaches and proposes the modification of the genes that are involved in the complex cell wall structure as a feasible solution to an efficient biomass production. Several key points for future research activities based on these emerging technologies are also discussed, focusing on the combination of multi-omics and gene editing approaches, which offer potential for improved biomass valorization and the development of tangible bioproducts.
引用
收藏
页数:19
相关论文
共 50 条
  • [21] Relevance of Multi-Omics Studies in Cardiovascular Diseases
    Leon-Mimila, Paola
    Wang, Jessica
    Huertas-Vazquez, Adriana
    FRONTIERS IN CARDIOVASCULAR MEDICINE, 2019, 6
  • [22] Multi-omics revolution to promote plant breeding efficiency
    Mahmood, Umer
    Li, Xiaodong
    Fan, Yonghai
    Chang, Wei
    Niu, Yue
    Li, Jiana
    Qu, Cunmin
    Lu, Kun
    FRONTIERS IN PLANT SCIENCE, 2022, 13
  • [23] Plant metabolic gene clusters in the multi-omics era
    Zhan, Chuansong
    Shen, Shuangqian
    Yang, Chenkun
    Liu, Zhenhua
    Fernie, Alisdair R.
    Graham, Ian A.
    Luo, Jie
    TRENDS IN PLANT SCIENCE, 2022, 27 (10) : 981 - 1001
  • [24] Single nucleus multi-omics identifies human cortical cell regulatory genome diversity
    Luo, Chongyuan
    Liu, Hanqing
    Xie, Fangming
    Armand, Ethan J.
    Siletti, Kimberly
    Bakken, Trygve E.
    Fang, Rongxin
    Doyle, Wayne I.
    Stuart, Tim
    Hodge, Rebecca D.
    Hu, Lijuan
    Wang, Bang -An
    Zhang, Zhuzhu
    Preissl, Sebastian
    Lee, Dong-Sung
    Zhou, Jingtian
    Niu, Sheng-Yong
    Castanon, Rosa
    Bartlett, Anna
    Rivkin, Angeline
    Wang, Xinxin
    Lucero, Jacinta
    Nery, Joseph R.
    Davis, David A.
    Mash, Deborah C.
    Satija, Rahul
    Dixon, Jesse R.
    Linnarsson, Sten
    Lein, Ed
    Behrens, M. Margarita
    Ren, Bing
    Mukamel, Eran A.
    Ecker, Joseph R.
    CELL GENOMICS, 2022, 2 (03):
  • [25] Multi-omics signatures of diverse plant callus cultures
    Kim, June-Sik
    Sato, Muneo
    Kojima, Mikiko
    Asrori, Muchamad Imam
    Uehara-Yamaguchi, Yukiko
    Takebayashi, Yumiko
    Do, Thi Nhung
    Do, Thi Yen
    Thi, Kieu Oanh Nguyen
    Sakakibara, Hitoshi
    Mochida, Keiichi
    Ogita, Shijiro
    Hirai, Masami Yokota
    PLANT BIOTECHNOLOGY, 2024, 41 (03) : 309 - 314
  • [26] Editorial: Artificial intelligence and bioinformatics applications for omics and multi-omics studies
    Facchiano, Angelo
    Heider, Dominik
    Mutarelli, Margherita
    FRONTIERS IN GENETICS, 2024, 15
  • [27] Multi-omics single-cell analysis
    Nicole Rusk
    Nature Methods, 2019, 16 : 679 - 679
  • [28] Sequencing-based methods for single-cell multi-omics studies
    Qin, Shanshan
    Liu, Songmei
    Weng, Xiaocheng
    SCIENCE CHINA-CHEMISTRY, 2023, 66 (11) : 3024 - 3043
  • [29] Sequencing-based methods for single-cell multi-omics studies
    Shanshan Qin
    Songmei Liu
    Xiaocheng Weng
    Science China(Chemistry), 2023, (11) : 3024 - 3043
  • [30] Multi-omics single-cell analysis
    Rusk, Nicole
    NATURE METHODS, 2019, 16 (08) : 679 - 679