High number of candidate gene variants are identified as disease-causing in a period of 4 years

被引:2
|
作者
Hills, Sonia [1 ,2 ]
Li, Qifei [1 ,2 ,3 ,4 ]
Madden, Jill A. [1 ,2 ]
Genetti, Casie A. [1 ,2 ]
Brownstein, Catherine A. [1 ,2 ,5 ]
Schmitz-Abe, Klaus [1 ,2 ,3 ,4 ,5 ,6 ]
Beggs, Alan H. [1 ,2 ,5 ,6 ]
Agrawal, Pankaj B. [1 ,2 ,3 ,4 ,7 ]
机构
[1] Boston Childrens Hosp, Div Genet & Genom, Boston, MA USA
[2] Boston Childrens Hosp, Manton Ctr Orphan Dis Res, Boston, MA USA
[3] Univ Miami, Dept Pediat, Div Neonatol, Miller Sch Med, Miami, FL USA
[4] Jackson Hlth Syst, Miami, FL USA
[5] Harvard Med Sch, Dept Pediat, Boston, MA USA
[6] Broad Inst MIT & Harvard, Cambridge, MA USA
[7] Univ Miami, Div Neonatol, Miller Sch Med, Miami, FL 33136 USA
基金
美国国家卫生研究院;
关键词
candidate gene variants; clinical exome reanalysis; gene-disease association; rare disease; PATHOGENICITY;
D O I
10.1002/ajmg.a.63509
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Advances in bioinformatic tools paired with the ongoing accumulation of genetic knowledge and periodic reanalysis of genomic sequencing data have led to an improvement in genetic diagnostic rates. Candidate gene variants (CGVs) identified during sequencing or on reanalysis but not yet implicated in human disease or associated with a phenotypically distinct condition are often not revisited, leading to missed diagnostic opportunities. Here, we revisited 33 such CGVs from our previously published study and determined that 16 of them are indeed disease-causing (novel or phenotype expansion) since their identification. These results emphasize the need to focus on previously identified CGVs during sequencing or reanalysis and the importance of sharing that information with researchers around the world, including relevant functional analysis to establish disease causality.
引用
收藏
页数:9
相关论文
共 50 条
  • [21] SVInterpreter: a web-based tool for structural variants inspection and identification of possible disease-causing candidate genes
    Fino, Joana
    Marques, Barbara
    Dong, Zirui
    David, Dezso
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2022, 30 (SUPPL 1) : 501 - 501
  • [22] Four Novel Disease-Causing Variants in the NOTCH3 Gene in Russian Patients with CADASIL
    Bostanova, Fatima
    Tsygankova, Polina
    Nagornov, Ilya
    Dadali, Elena
    Bessonova, Lyudmila
    Kulesh, Aleksey
    Drobakha, Viktor
    Danchenko, Irina
    Kanivets, Ilya
    Zakharova, Ekaterina
    GENES, 2023, 14 (09)
  • [23] HDAC inhibitors rescue multiple disease-causing CFTR variants
    Angles, Frederic
    Hutt, Darren M.
    Balch, William E.
    HUMAN MOLECULAR GENETICS, 2019, 28 (12) : 1982 - 2000
  • [24] Two Novel Disease-Causing Variants in the PDE6C Gene Underlying Achromatopsia
    Madeira, Carolina
    Godinho, Goncalo
    Grangeia, Ana
    Falcao, Manuel
    Silva, Renato
    Carneiro, Angela
    Brandao, Elisete
    Magalhaes, Augusto
    Falcao-Reis, Fernando
    Estrela-Silva, Sergio
    CASE REPORTS IN OPHTHALMOLOGY, 2021, 12 (03): : 749 - 760
  • [25] Twenty years of Alzheimer's disease-causing mutations
    Goate, Alison
    Hardy, John
    JOURNAL OF NEUROCHEMISTRY, 2012, 120 : 3 - 8
  • [26] PHOSPHORYLATION OF ABCB4 IS NECESSARY FOR PHOSPHATIDYLCHOLINE SECRETION: INSIGHTS FROM DISEASE-CAUSING VARIANTS
    Gautherot, J.
    Delautier, D.
    Maubert, M. -A.
    Ait-Slimane, T.
    Bolbach, G.
    Delaunay, J. -L.
    Durand-Schneider, A. -M.
    Barbu, V.
    Chignard, N.
    Housset, C.
    Maurice, M.
    Falguieres, T.
    JOURNAL OF HEPATOLOGY, 2014, 60 (01) : S201 - S201
  • [27] The spectrum of disease-causing and normal variation in the nebulin gene
    Lehtokari, V.
    Sagath, L.
    Kiiski, K.
    Wallgren-Pettersson, C.
    Pelin, K.
    NEUROMUSCULAR DISORDERS, 2019, 29 : S95 - S95
  • [28] High frequency of MEFV disease-causing variants in children with very-early-onset inflammatory bowel disease
    Abu Shtaya, Aasem
    Orenstein, Naama
    Bazak, Lily
    Lidzbarsky, Gabriel
    Kalis, Marina Lifshitc
    Amarilyo, Gil
    Sofrin-Drucker, Efrat
    Jaron, Ranit
    Shahar, Noa Ruhrman
    Gilad, Nesia Kropach
    Basel-Salmon, Lina
    PEDIATRIC RESEARCH, 2025, 97 (01) : 268 - 272
  • [29] High Frequency of MEFV Disease-Causing Variants in Children with Very-Early-Onset Inflammatory Bowel Disease
    Abu Shtaya, Aasem
    Orenstein, Naama
    Bazak, Lily
    Lidzbarsky, Gabriel Arie
    Kalis, Marina Lifshitc
    Amarilyo, Gil
    Sofrin-Drucker, Efrat
    Jaron, Ranit
    Ruhrman-Shahar, Noa
    Gilad, Nesia Kropach
    Basel-Salmon, Lina
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 384 - 385
  • [30] Paralogous annotation of disease-causing variants in long QT syndrome genes
    Ware, James S.
    Walsh, Roddy
    Cunningham, Fiona
    Birney, Ewan
    Cook, Stuart A.
    HUMAN MUTATION, 2012, 33 (08) : 1188 - 1191