IDENTIFICATION OF CELL TYPES AND GENE EXPRESSION PROGRAMS ASSOCIATED WITH JUVENILE DERMATOMYOSITIS USING MULTIPLEXED SINGLE-CELL RNA SEQUENCING AND MATRIX FACTORIZATION

被引：0
|
作者：
Neely, Jessica A. [1 ]
Hartoularos, George [1 ]
Rabadam, Gabrielle [1 ]
Bunis, Daniel [1 ]
Sun, Yang [1 ]
Gartner, Zev [1 ]
Ye, Chun J. [1 ]
Kim, Susan [1 ]
Sirota, Marina [1 ]
机构：
[1] Univ Calif San Francisco, San Francisco, CA USA
来源：
CLINICAL AND EXPERIMENTAL RHEUMATOLOGY | 2023年 / 41卷 / 02期
关键词：
D O I：
暂无
中图分类号：
R5 [内科学];
学科分类号：
1002 ; 100201 ;
摘要：
O-10
引用
收藏
页码：418 / 419
页数：2
相关论文
共 50 条
  • [21] Multiplexed droplet single-cell RNA-sequencing using natural genetic variation
    Hyun Min Kang
    Meena Subramaniam
    Sasha Targ
    Michelle Nguyen
    Lenka Maliskova
    Elizabeth McCarthy
    Eunice Wan
    Simon Wong
    Lauren Byrnes
    Cristina M Lanata
    Rachel E Gate
    Sara Mostafavi
    Alexander Marson
    Noah Zaitlen
    Lindsey A Criswell
    Chun Jimmie Ye
    Nature Biotechnology, 2018, 36 : 89 - 94
  • [22] Multiplexed Characterization of AAV Cellular Tropism and Promoter Expression in Large Animals Using Single-Cell RNA Sequencing
    Araki, Alex
    Jensen, Martin Borch
    Bowman, Chase
    Carrico, Chris
    Chio, Linda
    Dixit, Atray
    Duwaerts, Caroline
    Fuentes, Daniel
    Driver, Ian
    Kartha, Vinay
    Kuwahara, Akela
    Le, Carmen
    LePort, Francisco
    Miyazaki, Hikaru
    Morgan, Wyatt
    Popov, Dimitry
    Sachse, Frank
    Sahu, Neety
    Shambhu, Smitha
    Towne, Christopher
    Levings, Rachael Watson
    MOLECULAR THERAPY, 2023, 31 (04) : 9 - 10
  • [23] Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders
    Soeren Lukassen
    Foo Wei Ten
    Lukas Adam
    Roland Eils
    Christian Conrad
    Nature Machine Intelligence, 2020, 2 : 800 - 809
  • [24] Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders
    Lukassen, Soeren
    Ten, Foo Wei
    Adam, Lukas
    Eils, Roland
    Conrad, Christian
    NATURE MACHINE INTELLIGENCE, 2020, 2 (12) : 800 - 809
  • [25] Memory Sequencing Reveals Heritable Single-Cell Gene Expression Programs Associated with Distinct Cellular Behaviors
    Shaffer, Sydney M.
    Emert, Benjamin L.
    Hueros, Raul A. Reyes
    Cote, Christopher
    Harmange, Guillaume
    Schaff, Dylan L.
    Sizemore, Ann E.
    Gupte, Rohit
    Torre, Eduardo
    Singh, Abhyudai
    Bassett, Danielle S.
    Raj, Arjun
    CELL, 2020, 182 (04) : 947 - +
  • [26] Defining the Cell Types That Drive Idiopathic Pulmonary Fibrosis Using Single-Cell RNA Sequencing
    Poczobutt, Joanna M.
    Eickelberg, Oliver
    AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2019, 199 (12) : 1454 - 1456
  • [27] A Bayesian factorization method to recover single-cell RNA sequencing data
    Wen, Zi-Hang
    Langsam, Jeremy L.
    Zhang, Lu
    Shen, Wenjun
    Zhou, Xin
    CELL REPORTS METHODS, 2022, 2 (01):
  • [28] Demultiplexing of single-cell RNA-sequencing data using interindividual variation in gene expression
    Nassiri, Isar
    Kwok, Andrew J.
    Bhandari, Aneesha
    Bull, Katherine R.
    Garner, Lucy C.
    Klenerman, Paul
    Webber, Caleb
    Parkkinen, Laura
    Lee, Angela W.
    Wu, Yanxia
    Fairfax, Benjamin
    Knight, Julian C.
    Buck, David
    Piazza, Paolo
    BIOINFORMATICS ADVANCES, 2024, 4 (01):
  • [29] Identification of the key gene and pathways associated with osteoarthritis via single-cell RNA sequencing on synovial fibroblasts
    Wu, Zhen
    Shou, Lu
    Wang, Jian
    Xu, Xinwei
    MEDICINE, 2020, 99 (33) : E21707
  • [30] Automatic cell type identification methods for single-cell RNA sequencing
    Xie, Bingbing
    Jiang, Qin
    Mora, Antonio
    Li, Xuri
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2021, 19 : 5874 - 5887
12345