LoRID: a bioinformatic pipeline to discover alternative isoforms using nanopore long-read sequencing

被引：0
|
作者：
Soirat, Nicolas [1 ,2 ,3 ]
Aucouturier, Camille [1 ,2 ]
Philippe, Nicolas [3 ]
Vaur, Dominique [1 ]
Bertrand, Denis [3 ]
Raphael, Leman [1 ]
Krieger, Sophie [1 ,2 ]
Castera, Laurent [1 ]
机构：
[1] Ctr Francois Baclesse, INSERM, U1245, Caen, France
[2] Caen Normandy Univ, Caen, France
[3] SeqOne Genom, Bioinformat, Montpellier, France
来源：
EUROPEAN JOURNAL OF HUMAN GENETICS | 2024年 / 32卷
关键词：
D O I：
暂无
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
P18.067.C
引用
收藏
页码：669 / 670
页数：2
相关论文
共 50 条
  • [31] Long-read DNA methylation analysis of whole cancer genomes using a nanopore sequencing
    Nagae, Genta
    Aburatani, Hiroyuki
    CANCER SCIENCE, 2024, 115 : 399 - 399
  • [32] Balancing read length and sequencing depth: Optimizing Nanopore long-read sequencing for monocots with an emphasis on the Liliales
    de la Cerda, Gisel Y.
    Landis, Jacob B.
    Eifler, Evan
    Hernandez, Adriana I.
    Li, Fay-Wei
    Zhang, Jing
    Tribble, Carrie M.
    Karimi, Nisa
    Chan, Patricia
    Givnish, Thomas
    Strickler, Susan R.
    Specht, Chelsea D.
    APPLICATIONS IN PLANT SCIENCES, 2023, 11 (03):
  • [33] Toward improved diagnosis of genetic disease with nanopore long-read sequencing
    Deveson, Ira
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 83 - 83
  • [34] Whole Genome Assembly of Human Papillomavirus by Nanopore Long-Read Sequencing
    Yang, Shuaibing
    Zhao, Qianqian
    Tang, Lihua
    Chen, Zejia
    Wu, Zhaoting
    Li, Kaixin
    Lin, Ruoru
    Chen, Yang
    Ou, Danlin
    Zhou, Li
    Xu, Jianzhen
    Qin, Qingsong
    FRONTIERS IN GENETICS, 2022, 12
  • [35] Single-cell transcriptomics in the context of long-read nanopore sequencing
    Hayrabedyan, Soren
    Kostova, Petya
    Zlatkov, Viktor
    Todorova, Krassimira
    BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT, 2021, 35 (01) : 1439 - 1451
  • [36] Profiling the polyadenylated transcriptome of extracellular vesicles with long-read nanopore sequencing
    Juan-Carlos A. Padilla
    Seda Barutcu
    Ludovic Malet
    Gabrielle Deschamps-Francoeur
    Virginie Calderon
    Eunjeong Kwon
    Eric Lécuyer
    BMC Genomics, 24
  • [37] Profiling the polyadenylated transcriptome of extracellular vesicles with long-read nanopore sequencing
    Padilla, Juan-Carlos A.
    Barutcu, Seda
    Malet, Ludovic
    Deschamps-Francoeur, Gabrielle
    Calderon, Virginie
    Kwon, Eunjeong
    Lecuyer, Eric
    BMC GENOMICS, 2023, 24 (01)
  • [38] Isoform discovery in long-read sequencing: Tuning computational pipeline
    Iglesias, Natalia
    Labari, Ignacio Garcia
    Spetale, Flavio
    Ponce, Sergio
    Tapia, Elizabeth
    Bulacio, Pilar
    2024 IEEE BIENNIAL CONGRESS OF ARGENTINA, ARGENCON 2024, 2024,
  • [39] Application of Long-Read Nanopore Sequencing to the Search for Mutations in Hypertrophic Cardiomyopathy
    Salakhov, Ramil R.
    Golubenko, Maria, V
    Valiakhmetov, Nail R.
    Pavlyukova, Elena N.
    Zarubin, Aleksei A.
    Babushkina, Nadezhda P.
    Kucher, Aksana N.
    Sleptcov, Aleksei A.
    Nazarenko, Maria S.
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (24)
  • [40] Developing a bioinformatic pipeline to analyse a given disease-associated repeat locus using long-read PacBio HiFi sequencing data
    Szabo, Anita
    Dolzhenko, Egor
    Zarouchlioti, Christina
    Moghul, Ismail
    Liskova, Petra
    Skalicka, Pavlina
    Tuft, Stephen
    Brandine, Guilherme De Sena
    Aiyedun, Janet
    Gaysinskaya, Valeriya
    Mokveld, Tom
    Eberle, Michael
    Kilburn, Duncan
    Kingan, Sarah
    Davidson, Alice
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 1664 - 1664
12345