LoRID: a bioinformatic pipeline to discover alternative isoforms using nanopore long-read sequencing

被引：0
|
作者：
Soirat, Nicolas [1 ,2 ,3 ]
Aucouturier, Camille [1 ,2 ]
Philippe, Nicolas [3 ]
Vaur, Dominique [1 ]
Bertrand, Denis [3 ]
Raphael, Leman [1 ]
Krieger, Sophie [1 ,2 ]
Castera, Laurent [1 ]
机构：
[1] Ctr Francois Baclesse, INSERM, U1245, Caen, France
[2] Caen Normandy Univ, Caen, France
[3] SeqOne Genom, Bioinformat, Montpellier, France
来源：
EUROPEAN JOURNAL OF HUMAN GENETICS | 2024年 / 32卷
关键词：
D O I：
暂无
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
P18.067.C
引用
收藏
页码：669 / 670
页数：2
相关论文
共 50 条
  • [21] NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy
    de Koning, Willem
    Miladi, Milad
    Hiltemann, Saskia
    Heikema, Astrid
    Hays, John P.
    Flemming, Stephan
    van den Beek, Marius
    Mustafa, Dana A.
    Backofen, Rolf
    Gruening, Bjoern
    Stubbs, Andrew P.
    GIGASCIENCE, 2020, 9 (10):
  • [22] Diagnostic capabilities of nanopore long-read sequencing in muscular dystrophy
    Bruels, Christine C.
    Littel, Hannah R.
    Daugherty, Audrey L.
    Stafki, Seth
    Estrella, Elicia A.
    McGaughy, Emily S.
    Truong, Don
    Badalamenti, Jonathan P.
    Pais, Lynn
    Ganesh, Vijay S.
    O'Donnell-Luria, Anne
    Stalker, Heather J.
    Wang, Yang
    Collins, Christin
    Behlmann, Andrea
    Lemmers, Richard J. L. F.
    van der Maarel, Silvere M.
    Laine, Regina
    Ghosh, Partha S.
    Darras, Basil T.
    Zingariello, Carla D.
    Pacak, Christina A.
    Kunkel, Louis M.
    Kang, Peter B.
    ANNALS OF CLINICAL AND TRANSLATIONAL NEUROLOGY, 2022, 9 (08): : 1302 - 1309
  • [23] Nanopore Long-Read Sequencing Solves the Conundrum of FLG Genetics
    Bonilla, Pedro S.
    Strong, Cristina de Guzman
    JOURNAL OF INVESTIGATIVE DERMATOLOGY, 2024, 144 (08) : 1678 - 1680
  • [24] Genome sequencing using long-read sequencing
    McEwen, Juan Guillermo
    Gomez, Oscar Mauricio
    REVISTA DE LA ACADEMIA COLOMBIANA DE CIENCIAS EXACTAS FISICAS Y NATURALES, 2023, 47 (183): : 439 - 444
  • [25] Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
    Orabi, Baraa
    Xie, Ning
    McConeghy, Brian
    Dong, Xuesen
    Chauve, Cedric
    Hach, Faraz
    NUCLEIC ACIDS RESEARCH, 2023, 51 (02) : E11
  • [26] Detection of four isomers of the human cytomegalovirus genome using nanopore long-read sequencing
    Nanamiya, Hideaki
    Tanaka, Daisuke
    Hiyama, Gen
    Isogai, Takao
    Watanabe, Shinya
    VIRUS GENES, 2024, 60 (04) : 377 - 384
  • [27] Characterization of the poll allele in Brahman cattle using long-read Oxford Nanopore sequencing
    Lamb, Harrison J.
    Ross, Elizabeth M.
    Nguyen, Loan T.
    Lyons, Russell E.
    Moore, Stephen S.
    Hayes, Ben J.
    JOURNAL OF ANIMAL SCIENCE, 2020, 98 (05)
  • [28] Automatic identification of pathogenic rearrangements in the CFH region using long-read Nanopore sequencing
    Mille, Marie
    Bertrand, Denis
    el Sissy, Carine
    Yousfi, Nadhir
    Vieira-Martins, Paula
    Hamza, Abderaouf
    Vandermeersch, Sophie
    Beaumeunier, Sacha
    Blum, Michael
    Philippe, Nicolas
    Fremeaux-Bacchi, Veronique
    Mesnard, Laurent
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 1646 - 1646
  • [29] Multiplexed Assembly and Annotation of Synthetic Biology Constructs Using Long-Read Nanopore Sequencing
    Emiliani, Francesco E.
    Hsu, Ian
    McKenna, Aaron
    ACS SYNTHETIC BIOLOGY, 2022, 11 (07): : 2238 - 2246
  • [30] VirDetector: a bioinformatic pipeline for virus surveillance using nanopore sequencing
    Kaiser, Nick Laurenz
    Groschup, Martin H.
    Sadeghi, Balal
    BIOINFORMATICS, 2025, 41 (02)
12345